Package: comparer
Check: tests
New result: ERROR
    Running ‘testthat.R’ [22s/35s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(comparer)
    Loading required package: GauPro
    Loading required package: mixopt
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:testthat':
    
        matches
    
    The following objects are masked from 'package:stats':
    
        filter, lag
    
    The following objects are masked from 'package:base':
    
        intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    Loading required package: splitfngr
    Loading required package: numDeriv
    Loading required package: rmarkdown
    Loading required package: tidyr
    
    Attaching package: 'tidyr'
    
    The following object is masked from 'package:testthat':
    
        matches
    
    Loading required package: plyr
    ------------------------------------------------------------------------------
    You have loaded plyr after dplyr - this is likely to cause problems.
    If you need functions from both plyr and dplyr, please load plyr first, then dplyr:
    library(plyr); library(dplyr)
    ------------------------------------------------------------------------------
    
    Attaching package: 'plyr'
    
    The following objects are masked from 'package:dplyr':
    
        arrange, count, desc, failwith, id, mutate, rename, summarise,
        summarize
    
    Loading required package: progress
    > 
    > test_check("comparer")
    Recovered 6 / 6
    Recovered 6 / 12
    Error in summary.connection(connection) : invalid connection
    In addition: Warning message:
    In .Internal(gc(verbose, reset, full)) :
      closing unused connection 4 (<-localhost:11794)
    Recovered 1 / 4
    Completed all runs in 0.3 seconds 
    Starting to run 10 trials in batches of size 3 
    Finished running superbatches 
    [ FAIL 1 | WARN 0 | SKIP 0 | PASS 426 ]
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test_ffexp.R:35:5'): ffexp ────────────────────────────────────────
    `pp` inherits from `'ggmatrix'/'GGally::ggmatrix'/'S7_object'` not `'character'`.
    
    [ FAIL 1 | WARN 0 | SKIP 0 | PASS 426 ]
    Error: Test failures
    Execution halted

Package: ezEDA
Check: tests
New result: ERROR
    Running ‘testthat.R’ [2s/2s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(ezEDA)
    > 
    > test_check("ezEDA")
    [ FAIL 1 | WARN 0 | SKIP 0 | PASS 86 ]
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test_multi_measures_relationship.R:4:3'): Plot returns gg object ──
    `x` not equal to `expected`.
    1/1 mismatches
    x[1]: "ggmatrix"
    y[1]: "gg"
    Backtrace:
        ▆
     1. └─testthat::expect_that(class(p)[[1]], equals("gg")) at test_multi_measures_relationship.R:4:3
     2.   └─testthat (local) condition(object)
     3.     └─testthat::expect_equal(x, expected, ..., expected.label = label)
    
    [ FAIL 1 | WARN 0 | SKIP 0 | PASS 86 ]
    Error: Test failures
    Execution halted

Package: rbioacc
Check: tests
New result: ERROR
    Running ‘testthat.R’ [18s/18s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(rbioacc)
    > 
    > test_check("rbioacc")
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 2.8e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.001 seconds (Warm-up)
    Chain 1:                0.001 seconds (Sampling)
    Chain 1:                0.002 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 9e-06 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0 seconds (Warm-up)
    Chain 2:                0.001 seconds (Sampling)
    Chain 2:                0.001 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 0.000115 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.15 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.003 seconds (Sampling)
    Chain 1:                0.005 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: 
    Chain 2: Gradient evaluation took 5.4e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.54 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.001 seconds (Sampling)
    Chain 2:                0.003 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 4.4e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.44 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.003 seconds (Sampling)
    Chain 1:                0.005 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 2.4e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.003 seconds (Sampling)
    Chain 2:                0.005 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 2.6e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.001 seconds (Sampling)
    Chain 1:                0.003 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 9e-06 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.001 seconds (Warm-up)
    Chain 2:                0 seconds (Sampling)
    Chain 2:                0.001 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: 
    Chain 1: Gradient evaluation took 0.000102 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.02 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.003 seconds (Sampling)
    Chain 1:                0.005 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: 
    Chain 2: Gradient evaluation took 5.2e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.52 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.002 seconds (Sampling)
    Chain 2:                0.004 seconds (Total)
    Chain 2: 
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Scale for fill is already present.
    Adding another scale for fill, which will replace the existing scale.
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Scale for fill is already present.
    Adding another scale for fill, which will replace the existing scale.
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 2e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0 seconds (Warm-up)
    Chain 1:                0 seconds (Sampling)
    Chain 1:                0 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 9e-06 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0 seconds (Warm-up)
    Chain 2:                0 seconds (Sampling)
    Chain 2:                0 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: 
    Chain 1: Gradient evaluation took 9.2e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.92 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.001 seconds (Sampling)
    Chain 1:                0.003 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: 
    Chain 2: Gradient evaluation took 5.4e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.54 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
    Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
    Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
    Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
    Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
    Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
    Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
    Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.002 seconds (Sampling)
    Chain 2:                0.004 seconds (Total)
    Chain 2: 
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Scale for colour is already present.
    Adding another scale for colour, which will replace the existing scale.
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Scale for colour is already present.
    Adding another scale for colour, which will replace the existing scale.
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Scale for colour is already present.
    Adding another scale for colour, which will replace the existing scale.
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Scale for colour is already present.
    Adding another scale for colour, which will replace the existing scale.
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Scale for colour is already present.
    Adding another scale for colour, which will replace the existing scale.
    Loading required namespace: coda
    Failed with error:  'there is no package called 'coda''
    Scale for colour is already present.
    Adding another scale for colour, which will replace the existing scale.
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 2.6e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.002 seconds (Sampling)
    Chain 1:                0.004 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 1e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0 seconds (Warm-up)
    Chain 2:                0.002 seconds (Sampling)
    Chain 2:                0.002 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 3).
    Chain 3: 
    Chain 3: Gradient evaluation took 9e-06 seconds
    Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
    Chain 3: Adjust your expectations accordingly!
    Chain 3: 
    Chain 3: 
    Chain 3: WARNING: No variance estimation is
    Chain 3:          performed for num_warmup < 20
    Chain 3: 
    Chain 3: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 3: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 3: 
    Chain 3:  Elapsed Time: 0.001 seconds (Warm-up)
    Chain 3:                0 seconds (Sampling)
    Chain 3:                0.001 seconds (Total)
    Chain 3: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 4).
    Chain 4: 
    Chain 4: Gradient evaluation took 9e-06 seconds
    Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
    Chain 4: Adjust your expectations accordingly!
    Chain 4: 
    Chain 4: 
    Chain 4: WARNING: No variance estimation is
    Chain 4:          performed for num_warmup < 20
    Chain 4: 
    Chain 4: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 4: 
    Chain 4:  Elapsed Time: 0 seconds (Warm-up)
    Chain 4:                0 seconds (Sampling)
    Chain 4:                0 seconds (Total)
    Chain 4: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: 
    Chain 1: Gradient evaluation took 0.000107 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.07 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
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    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.003 seconds (Sampling)
    Chain 1:                0.005 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: 
    Chain 2: Gradient evaluation took 5.6e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.56 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.001 seconds (Sampling)
    Chain 2:                0.003 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 3).
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: Rejecting initial value:
    Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 3:   Stan can't start sampling from this initial value.
    Chain 3: 
    Chain 3: Gradient evaluation took 5.6e-05 seconds
    Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.56 seconds.
    Chain 3: Adjust your expectations accordingly!
    Chain 3: 
    Chain 3: 
    Chain 3: WARNING: No variance estimation is
    Chain 3:          performed for num_warmup < 20
    Chain 3: 
    Chain 3: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 3: 
    Chain 3:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 3:                0.003 seconds (Sampling)
    Chain 3:                0.005 seconds (Total)
    Chain 3: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 4).
    Chain 4: Rejecting initial value:
    Chain 4:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 4:   Stan can't start sampling from this initial value.
    Chain 4: Rejecting initial value:
    Chain 4:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 4:   Stan can't start sampling from this initial value.
    Chain 4: Rejecting initial value:
    Chain 4:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 4:   Stan can't start sampling from this initial value.
    Chain 4: Rejecting initial value:
    Chain 4:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 4:   Stan can't start sampling from this initial value.
    Chain 4: Rejecting initial value:
    Chain 4:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 4:   Stan can't start sampling from this initial value.
    Chain 4: 
    Chain 4: Gradient evaluation took 5.5e-05 seconds
    Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.55 seconds.
    Chain 4: Adjust your expectations accordingly!
    Chain 4: 
    Chain 4: 
    Chain 4: WARNING: No variance estimation is
    Chain 4:          performed for num_warmup < 20
    Chain 4: 
    Chain 4: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 4: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 4: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 4: 
    Chain 4:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 4:                0.001 seconds (Sampling)
    Chain 4:                0.003 seconds (Total)
    Chain 4: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 4.2e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.42 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.003 seconds (Warm-up)
    Chain 1:                0.002 seconds (Sampling)
    Chain 1:                0.005 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 2.4e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.002 seconds (Sampling)
    Chain 2:                0.004 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 3).
    Chain 3: 
    Chain 3: Gradient evaluation took 2.4e-05 seconds
    Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
    Chain 3: Adjust your expectations accordingly!
    Chain 3: 
    Chain 3: 
    Chain 3: WARNING: No variance estimation is
    Chain 3:          performed for num_warmup < 20
    Chain 3: 
    Chain 3: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 3: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 3: 
    Chain 3:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 3:                0.002 seconds (Sampling)
    Chain 3:                0.004 seconds (Total)
    Chain 3: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 4).
    Chain 4: 
    Chain 4: Gradient evaluation took 2.4e-05 seconds
    Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
    Chain 4: Adjust your expectations accordingly!
    Chain 4: 
    Chain 4: 
    Chain 4: WARNING: No variance estimation is
    Chain 4:          performed for num_warmup < 20
    Chain 4: 
    Chain 4: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 4: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 4: 
    Chain 4:  Elapsed Time: 0.001 seconds (Warm-up)
    Chain 4:                0.001 seconds (Sampling)
    Chain 4:                0.002 seconds (Total)
    Chain 4: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 2.3e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.001 seconds (Warm-up)
    Chain 1:                0.001 seconds (Sampling)
    Chain 1:                0.002 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 9e-06 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 2: 
    Chain 2:  Elapsed Time: 0 seconds (Warm-up)
    Chain 2:                0.001 seconds (Sampling)
    Chain 2:                0.001 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: 
    Chain 1: Gradient evaluation took 9.4e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.94 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.002 seconds (Sampling)
    Chain 1:                0.004 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: 
    Chain 2: Gradient evaluation took 5.5e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.55 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.001 seconds (Sampling)
    Chain 2:                0.003 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 2.1e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
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    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.001 seconds (Sampling)
    Chain 1:                0.003 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 9e-06 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
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    Chain 2: 
    Chain 2:  Elapsed Time: 0 seconds (Warm-up)
    Chain 2:                0 seconds (Sampling)
    Chain 2:                0 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: 
    Chain 1: Gradient evaluation took 8.9e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.89 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
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    Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.002 seconds (Sampling)
    Chain 1:                0.004 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 5.2e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.52 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
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    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.002 seconds (Sampling)
    Chain 2:                0.004 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 2e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
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    Chain 1: 
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    Chain 1: 
    Chain 1:  Elapsed Time: 0.001 seconds (Warm-up)
    Chain 1:                0 seconds (Sampling)
    Chain 1:                0.001 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 9e-06 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
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    Chain 2: 
    Chain 2:  Elapsed Time: 0 seconds (Warm-up)
    Chain 2:                0 seconds (Sampling)
    Chain 2:                0 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: Rejecting initial value:
    Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 1:   Stan can't start sampling from this initial value.
    Chain 1: 
    Chain 1: Gradient evaluation took 9e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.9 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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    Chain 1: 
    Chain 1:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 1:                0.002 seconds (Sampling)
    Chain 1:                0.004 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: Rejecting initial value:
    Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
    Chain 2:   Stan can't start sampling from this initial value.
    Chain 2: 
    Chain 2: Gradient evaluation took 5.3e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.53 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
    Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
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    Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
    Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 2:                0.001 seconds (Sampling)
    Chain 2:                0.003 seconds (Total)
    Chain 2: 
    [ FAIL 5 | WARN 86 | SKIP 9 | PASS 75 ]
    
    ══ Skipped tests (9) ═══════════════════════════════════════════════════════════
    • On CRAN (6): 'test-elim.R:3:3', 'test-fit.R:3:3', 'test-fitODE.R:3:3',
      'test-predict.R:3:3', 'test-predict.R:61:3', 'test-predict_manual.R:3:3'
    • empty test (3): 'test-PP.R:1:1', 'test-correlation.R:1:1', 'test-ppc.R:1:1'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test-correlation.R:28:5'): corrPlot ───────────────────────────────
    all(class(plt_MGS) == c("gg", "ggmatrix")) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-correlation.R:29:5'): corrPlot ───────────────────────────────
    all(class(plt_MGS_det) == c("gg", "ggmatrix")) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-correlation.R:30:5'): corrPlot ───────────────────────────────
    all(class(plt_MGSG) == c("gg", "ggmatrix")) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-correlation.R:31:5'): corrPlot ───────────────────────────────
    all(class(plt_MGSG_det) == c("gg", "ggmatrix")) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-correlation.R:32:5'): corrPlot ───────────────────────────────
    all(class(plt_MGSG_sto) == c("gg", "ggmatrix")) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    
    [ FAIL 5 | WARN 86 | SKIP 9 | PASS 75 ]
    Error: Test failures
    Execution halted

Package: tidycomm
Check: tests
New result: ERROR
    Running ‘testthat.R’ [30s/30s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(tidycomm)
    
    Attaching package: 'tidycomm'
    
    The following object is masked from 'package:testthat':
    
        describe
    
    > 
    > test_check("tidycomm")
    [ FAIL 3 | WARN 0 | SKIP 0 | PASS 388 ]
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test-tdcmm_visualize.R:41:3'): implemented visualize() calls return ggplot2 (gg) ──
    visualize(correlate(WoJ, ethics_1, ethics_2, ethics_3)) inherits from 'ggmatrix'/'GGally::ggmatrix'/'S7_object' not 'gg'.
    ── Failure ('test-tdcmm_visualize.R:48:3'): implemented visualize() calls return ggplot2 (gg) ──
    visualize(...) inherits from 'ggmatrix'/'GGally::ggmatrix'/'S7_object' not 'gg'.
    ── Failure ('test-tdcmm_visualize.R:59:3'): implemented visualize() calls return ggplot2 (gg) ──
    `v` inherits from 'ggmatrix'/'GGally::ggmatrix'/'S7_object' not 'gg'.
    
    [ FAIL 3 | WARN 0 | SKIP 0 | PASS 388 ]
    Error: Test failures
    Execution halted