R Under development (unstable) (2023-08-30 r85030 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(GGMselect) Loading required package: mvtnorm > itest=1 > # +++++++++++++++++++++++++++++++++++++++++++++++++ > p=30 > n=30 > eta=0.13 > dmax=3 > iG = 4 > iS = 20 > set.seed(iG) > Gr <- simulateGraph(p,eta) > set.seed(iS*(pi/3.1415)**iG) > X <- rmvnorm(n, mean=rep(0,p), sigma=Gr$C) > > K=2.5 > > # ptm <- proc.time() > > print( selectQE(X, dmax, K, verbose=TRUE)) *** Run family QE Number of RSS calculated: 122670 *** Running loop GrSymQE from iK = 1 to 1 *** Running loop GrSymQE for iK = 1 and d = 1 to 4 *** GrSymQE: iK = 1 d = 1 *** GrSymQE: iK = 1 d = 2 *** GrSymQE: iK = 1 d = 3 *** GrSymQE: iK = 1 d = 4 *** No stepwise procedure for iK = 1 (the number of graphs in the collection = 12 ) *** End family QE $G 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 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0 0 0 21 19 0 0 22 14 0 0 23 27 0 0 24 0 0 0 25 11 27 0 26 0 0 0 27 23 25 0 28 0 0 0 29 0 0 0 30 0 0 0 > > # cat("Elapsed time ", proc.time()-ptm,"\n") > > # Test of special options > dmax=c(rep(2,25), rep(3, 5)) # p-vector of maximal degree > max.mod = 10 # Force the stepwise > K= c(2.5, 3) > print(selectQE(X, dmax, K, verbose=TRUE, max.nG=max.mod)) *** Run family QE Number of RSS calculated: 31320 *** Running loop GrSymQE from iK = 1 to 2 *** Running loop GrSymQE for iK = 1 and d = 1 to 4 *** GrSymQE: iK = 1 d = 1 *** GrSymQE: iK = 1 d = 2 *** Stepwise procedure for iK = 1 *** Running loop GrSymQE for iK = 2 and d = 1 to 4 *** GrSymQE: iK = 2 d = 1 *** GrSymQE: iK = 2 d = 2 *** Stepwise procedure for iK = 2 *** End family QE $G , , K= 2.5 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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0 0 0 14 22 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 21 0 0 20 0 0 0 21 19 0 0 22 14 0 0 23 27 0 0 24 0 0 0 25 11 27 0 26 0 0 0 27 23 25 0 28 0 0 0 29 0 0 0 30 0 0 0 , , K= 3 [,1] [,2] [,3] 1 0 0 0 2 8 0 0 3 6 0 0 4 0 0 0 5 7 0 0 6 3 0 0 7 5 0 0 8 2 0 0 9 12 0 0 10 0 0 0 11 25 0 0 12 9 0 0 13 0 0 0 14 22 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 21 0 0 20 0 0 0 21 19 0 0 22 14 0 0 23 27 0 0 24 0 0 0 25 11 27 0 26 0 0 0 27 23 25 0 28 0 0 0 29 0 0 0 30 0 0 0 Warning messages: 1: In calcGrChapSymQE(SCRQE.out$Mat.Chap, SCRQE.out$SCR, scr.init, : *** Run stepwise procedure for iK=1 because the number of graphs in the collection =12 (>max.nG=10) 2: In calcGrChapSymQE(SCRQE.out$Mat.Chap, SCRQE.out$SCR, scr.init, : *** Run stepwise procedure for iK=2 because the number of graphs in the collection =12 (>max.nG=10) > > cat ("End of test ", itest, "\n") End of test 1 > > > > proc.time() user system elapsed 0.92 0.15 1.06