library(GGIRread) context("reading GENEActiv binary data") test_that("GENEActivReader reads data from file correctly", { binfile = system.file("testfiles/GENEActiv_testfile.bin", package = "GGIRread")[1] cppdata = GENEActivReader(filename = binfile, start = 1, end = 1, progress_bar = TRUE) expect_equal(cppdata$info$ReadOK, 1) expect_equal(cppdata$info$ReadErrors, 0) expect_equal(cppdata$info$SampleRate, 85.7) expect_equal(cppdata$info$numBlocksTotal, 222048) expect_equal(length(cppdata$time), 300) expect_equal(length(cppdata$x), 300) expect_equal(length(cppdata$y), 300) expect_equal(length(cppdata$z), 300) expect_equal(length(cppdata$temperature), 300) expect_equal(cppdata$temperature[1], 21.5) expect_equal(cppdata$z[300], -0.80836403369903564453, tolerance = 15) expect_equal(cppdata$time[1], 0) }) test_that("readGENEActiv reads data from file correctly", { old <- options(digits.secs = 3) binfile = system.file("testfiles/GENEActiv_testfile.bin", package = "GGIRread")[1] rdata = readGENEActiv(filename = binfile, start = 1, end = 1, desiredtz = "Europe/London") expect_equal(rdata$header$ReadOK, 1) expect_equal(rdata$header$ReadErrors, 0) expect_equal(rdata$header$SampleRate, 85.7) expect_equal(rdata$header$numBlocksTotal, 222048) expect_equal(rdata$header$Handedness, "") expect_equal(rdata$header$RecordingID, "") expect_equal(rdata$header$DeviceLocation, "") expect_equal(rdata$header$DeviceModel, "1.1") expect_equal(length(rdata$data$time), 300) expect_equal(length(rdata$data$x), 300) expect_equal(length(rdata$data$y), 300) expect_equal(length(rdata$data$z), 300) expect_equal(length(rdata$data$temperature), 300) expect_equal(length(rdata$data$light), 300) expect_equal(rdata$data$temperature[1], 21.5) expect_equal(rdata$data$light[2], 2.666667, tolerance = 4) expect_equal(rdata$data$z[300], -0.80836403369903564453, tolerance = 15) expect_equal(rdata$data$time[1], 1369905174.500) # output is now expressed in seconds rather than milliseconds tzAms = "Europe/Amsterdam" tzLon = "Europe/London" # desiredtz == configtz rdata2 = readGENEActiv(filename = binfile, start = 1, end = 1, desiredtz = tzLon, configtz = tzLon) expect_equal(rdata2$data.out$time[1], 1369905174.500) expect_equal(as.character(as.POSIXlt(rdata2$data.out$time[1], tz = tzLon, origin = "1970-01-01")), "2013-05-30 10:12:54.5") # desiredtz < configtz rdata3 = readGENEActiv(filename = binfile, start = 1, end = 1, desiredtz = tzLon, configtz = tzAms) expect_equal(rdata3$data.out$time[1], 1369901574.500) expect_equal(as.character(as.POSIXlt(rdata3$data.out$time[1], tz = tzLon, origin = "1970-01-01")), "2013-05-30 09:12:54.5") # desiredtz > configtz rdata4 = readGENEActiv(filename = binfile, start = 1, end = 1, desiredtz = tzAms, configtz = tzLon) expect_equal(rdata4$data.out$time[1], 1369905174.500) expect_equal(as.character(as.POSIXlt(rdata4$data.out$time[1], tz = tzAms, origin = "1970-01-01")), "2013-05-30 11:12:54.5") options(old) })