library(GGIR) context("detectEventBouts") test_that("Detect bouts in events", { skip_on_cran() # create dummy test data metashort = data.frame(ENMO = c(rep(0, 24), rep(0.12, 42), rep(0, 24)), step_count = c(rep(0, 24), rep(5, 42), rep(0, 24))) cn_metashort = colnames(metashort) anwindices = 1:84 anwi_index = 1 varnum = metashort$step_count[anwindices] varnum_event = rep(0, length(varnum)) varnum_event[which(metashort$ENMO[anwindices] > 0.05)] = 10 ws3 = 5 anwi_nameindices = "_1234hrs" daysummary = matrix("", 1, 25) fi = 1 di = 1 ds_names = "" myfun = list(ilevels = c(0, 50, 100), clevels = c(0, 30, 50), qlevels = c(0.25, 0.5, 0.75), ebout.dur = c(1, 5, 10), ebout.th.cad = 30, ebout.th.acc = 50, ebout.criter = 1, ebout.condition = "AND") # run function eventBouts = detectEventBouts(myfun, varnum_event = varnum_event, varnum = varnum, UnitReScale = 1000, daysummary = daysummary, ds_names = ds_names, di = di, fi = fi, ws3 = ws3, boutnameEnding = "_anyRandomText") expect_equal(as.numeric(eventBouts$daysummary)[1:5], c(3.5, 1, 3.5, 0, 0)) expect_equal(eventBouts$ds_names[5], "ExtFunEvent_Bout_number_E5S_B5M100%_cadT30_AND_accT50__anyRandomText") })