R Under development (unstable) (2025-12-09 r89129 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(GCubeR)
> 
> test_check("GCubeR")
dbh' column added from 'c130'.
No compatible species found for Vallet VTA method. No column created.
No compatible species found for Vallet merchantable volume (vc22). No column created.
Missing values detected in 'c130' or 'htot' for rows: 1. Provide complete data or use na_action = 'omit'.
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No compatible species found for Bouvard method (only QUERCUS_SP is supported). No volume column created.
The following rows have no trunk volume values in any of the Dagnelie columns (dagnelie_vc22_2, dagnelie_vc22_1g, dagnelie_vc22_1). CNPF (Dagnelie) will be skipped for these rows: 1
Column 'vallet_vta' not found. Vallet method will be skipped.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
dbh' column added from 'c130'.
   species_code c130 htot c150      dbh dagnelie_vc22_1 dagnelie_br
1 QUERCUS_ROBUR  156   25   NA 49.65634        2.112095   0.4720333
  dagnelie_vc22_2 vallet_vta vallet_vc22
1        2.338697   2.931665    2.448343
Circumference constraint violated: 1 tree(s) have c130 < 10 cm or > 70 cm. Rondeux volumes will be set to NA for these rows: 1FALSE
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No compatible species found for Bouvard method (only QUERCUS_SP is supported). No volume column created.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
`geom_line()`: Each group consists of only one observation.
i Do you need to adjust the group aesthetic?
# A tibble: 2 x 2
  species_code  `[155,180)`
  <chr>               <dbl>
1 QUERCUS_ROBUR        2.11
2 TOTAL                2.11
dbh' column added from 'c130'.
   species_code c130 htot hdom c150      dbh dagnelie_vc22_1 dagnelie_br
1 QUERCUS_ROBUR  156   30   32   NA 49.65634        2.112095   0.4720333
  dagnelie_vc22_1g dagnelie_vc22_2 vallet_vta vallet_vc22
1         2.683598        2.786668    3.33562    2.938012
Circumference constraint violated: 1 tree(s) have c130 < 10 cm or > 70 cm. Rondeux volumes will be set to NA for these rows: 1FALSE
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No compatible species found for Bouvard method (only QUERCUS_SP is supported). No volume column created.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
`geom_line()`: Each group consists of only one observation.
i Do you need to adjust the group aesthetic?
# A tibble: 2 x 2
  species_code  `[155,180)`
  <chr>               <dbl>
1 QUERCUS_ROBUR        2.11
2 TOTAL                2.11
dbh' column added from 'c130'.
   species_code c130 htot c150      dbh dagnelie_vc22_1 dagnelie_br
1 QUERCUS_ROBUR  140   28   NA 44.56338        1.674016   0.3257722
  dagnelie_vc22_2 vallet_vta vallet_vc22
1        2.110962   2.541768    2.208499
Circumference constraint violated: 1 tree(s) have c130 < 10 cm or > 70 cm. Rondeux volumes will be set to NA for these rows: 1FALSE
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No compatible species found for Bouvard method (only QUERCUS_SP is supported). No volume column created.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
`geom_line()`: Each group consists of only one observation.
i Do you need to adjust the group aesthetic?
# A tibble: 2 x 2
  species_code  `[130,155)`
  <chr>               <dbl>
1 QUERCUS_ROBUR        1.67
2 TOTAL                1.67
dbh' column added from 'c130'.
   species_code c130 htot c150      dbh dagnelie_vc22_1 dagnelie_br
1 QUERCUS_ROBUR  120   25   NA 38.19719        1.195037   0.1870998
  dagnelie_vc22_2 vallet_vta vallet_vc22
1        1.400193   1.703957    1.448724
Circumference constraint violated: 1 tree(s) have c130 < 10 cm or > 70 cm. Rondeux volumes will be set to NA for these rows: 1FALSE
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No compatible species found for Bouvard method (only QUERCUS_SP is supported). No volume column created.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
`geom_line()`: Each group consists of only one observation.
i Do you need to adjust the group aesthetic?
# A tibble: 2 x 2
  species_code  `[105,130)`
  <chr>               <dbl>
1 QUERCUS_ROBUR        1.20
2 TOTAL                1.20
dbh' column added from 'c130'.
   species_code c130 htot c150      dbh dagnelie_vc22_1 dagnelie_br
1 QUERCUS_ROBUR  120   25   NA 38.19719        1.195037   0.1870998
  dagnelie_vc22_2 vallet_vta vallet_vc22
1        1.400193   1.703957    1.448724
Circumference constraint violated: 1 tree(s) have c130 < 10 cm or > 70 cm. Rondeux volumes will be set to NA for these rows: 1FALSE
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No compatible species found for Bouvard method (only QUERCUS_SP is supported). No volume column created.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
`geom_line()`: Each group consists of only one observation.
i Do you need to adjust the group aesthetic?
# A tibble: 2 x 2
  species_code  `[105,130)`
  <chr>               <dbl>
1 QUERCUS_ROBUR        1.20
2 TOTAL                1.20
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c7ebe3efc.csv
  tree_id  species_code     c150 c130 dbh htot hdom dagnelie_vc22_1 dagnelie_br
1       1 QUERCUS_ROBUR 145.0000   NA  NA   25   NA              NA          NA
2       2   PICEA_ABIES 153.3954  156  40   30   32        2.551904          NA
  dagnelie_vc22_1g dagnelie_vc22_2 vallet_vta vallet_vc22
1               NA              NA         NA          NA
2         2.605238        2.509917   2.808593    2.154353
Circumference constraint violated: 1 tree(s) have c130 < 10 cm or > 70 cm. Rondeux volumes will be set to NA for these rows: 2FALSE
Missing values detected in 'c130' or 'htot' for rows: 1. Provide complete data or use na_action = 'omit'.
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No compatible species found for Bouvard method (only QUERCUS_SP is supported). No volume column created.
The following rows have no trunk volume values in any of the Dagnelie columns (dagnelie_vc22_2, dagnelie_vc22_1g, dagnelie_vc22_1). CNPF (Dagnelie) will be skipped for these rows: 1
The following rows have no trunk volume values in column 'vallet_vc22'. CNPF (Vallet) will be skipped for these rows: 1
The following rows have no trunk volume values in column 'algan_vc22'. CNPF (Algan) will be skipped for these rows: 1
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
`geom_line()`: Each group consists of only one observation.
i Do you need to adjust the group aesthetic?
# A tibble: 2 x 2
  species_code `[155,180)`
  <chr>              <dbl>
1 PICEA_ABIES         2.55
2 TOTAL               2.55
dbh' column added from 'c130'.
   species_code c130 htot vallet_vc22 c150      dbh dagnelie_vc22_1 dagnelie_br
1 QUERCUS_ROBUR  140   28    2.208499   NA 44.56338        1.674016   0.3257722
  dagnelie_vc22_2 vallet_vta
1        2.110962   2.541768
Circumference constraint violated: 1 tree(s) have c130 < 10 cm or > 70 cm. Rondeux volumes will be set to NA for these rows: 1FALSE
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No compatible species found for Bouvard method (only QUERCUS_SP is supported). No volume column created.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
`geom_line()`: Each group consists of only one observation.
i Do you need to adjust the group aesthetic?
# A tibble: 2 x 2
  species_code  `[130,155)`
  <chr>               <dbl>
1 QUERCUS_ROBUR        2.21
2 TOTAL                2.21
dbh' column added from 'c130'.
Column 'vallet_vta' not found. Vallet method will be skipped.
Column 'vallet_vc22' not found. CNPF (Vallet) will be skipped.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
`geom_line()`: Each group consists of only one observation.
i Do you need to adjust the group aesthetic?
# A tibble: 2 x 2
  species_code  `[130,155)`
  <chr>               <dbl>
1 QUERCUS_ROBUR        1.67
2 TOTAL                1.67
1'c130' values filled from 'dbh'
1'dbh' values filled from 'c130'
1'c130' values filled from 'dbh'
2'dbh' values filled from 'c130'
dbh' column added from 'c130'.
1'dbh' values filled from 'c130'
Rows outside domain (dbh <= 15 cm for ABIES_ALBA or PICEA_ABIES): 2
The following rows have no trunk volume values in any of the Dagnelie columns (dagnelie_vc22_2, dagnelie_vc22_1g, dagnelie_vc22_1). CNPF (Dagnelie) will be skipped for these rows: 1
The following rows have no trunk volume values in column 'vallet_vc22'. CNPF (Vallet) will be skipped for these rows: 1
The following rows have no trunk volume values in column 'rondeux_vc22'. CNPF (Rondeux) will be skipped for these rows: 1
The following rows have no trunk volume values in column 'algan_vc22'. CNPF (Algan) will be skipped for these rows: 1
The following rows have no trunk volume values in any of the Dagnelie columns (dagnelie_vc22_2, dagnelie_vc22_1g, dagnelie_vc22_1). CNPF (Dagnelie) will be skipped for these rows: 1, 2
The following rows have no trunk volume values in column 'vallet_vc22'. CNPF (Vallet) will be skipped for these rows: 1, 3
The following rows have no trunk volume values in column 'rondeux_vc22'. CNPF (Rondeux) will be skipped for these rows: 1, 2, 3
The following rows have no trunk volume values in column 'algan_vc22'. CNPF (Algan) will be skipped for these rows: 1, 2, 3
Unknown species : NA
Column 'vallet_vta' not found. Vallet method will be skipped.
Column 'vallet_vc22' not found. CNPF (Vallet) will be skipped.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
Column 'vallet_vc22' not found. CNPF (Vallet) will be skipped.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
Column 'vallet_vta' not found. Vallet method will be skipped.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
Column 'vallet_vta' not found. Vallet method will be skipped.
Column 'vallet_vc22' not found. CNPF (Vallet) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
Column 'vallet_vta' not found. Vallet method will be skipped.
Column 'vallet_vc22' not found. CNPF (Vallet) will be skipped.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'vallet_vta' not found. Vallet method will be skipped.
Column 'vallet_vc22' not found. CNPF (Vallet) will be skipped.
Column 'rondeux_vc22' not found. CNPF (Rondeux) will be skipped.
Column 'algan_vc22' not found. CNPF (Algan) will be skipped.
No vc22 column found (dagnelie_vc22_2, dagnelie_vc22_1g, dagnelie_vc22_1). CNPF method (Dagnelie) will be skipped.
The following rows have no trunk volume values in column 'rondeux_vc22'. CNPF (Rondeux) will be skipped for these rows: 2
The following rows have no trunk volume values in column 'algan_vc22'. CNPF (Algan) will be skipped for these rows: 1, 2
Column 'vallet_vta' not found. Vallet method will be skipped.
No vc22 column found (dagnelie_vc22_2, dagnelie_vc22_1g, dagnelie_vc22_1). CNPF method (Dagnelie) will be skipped.
The following rows have no trunk volume values in column 'vallet_vc22'. CNPF (Vallet) will be skipped for these rows: 1
The following rows have no trunk volume values in column 'algan_vc22'. CNPF (Algan) will be skipped for these rows: 1, 2
Column 'vallet_vta' not found. Vallet method will be skipped.
No vc22 column found (dagnelie_vc22_2, dagnelie_vc22_1g, dagnelie_vc22_1). CNPF method (Dagnelie) will be skipped.
The following rows have no trunk volume values in column 'vallet_vc22'. CNPF (Vallet) will be skipped for these rows: 1
The following rows have no trunk volume values in column 'rondeux_vc22'. CNPF (Rondeux) will be skipped for these rows: 2
Column 'vallet_vta' not found. Vallet method will be skipped.
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c45426a92.csv
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c52f82835.csv
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c7a2b48c7.csv
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c45db519a.csv
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c1d4239aa.csv
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c2a6262fc.csv
No valid Rondeux volumes computed. Columns not created.
No compatible species (LARIX_DECIDUA or LARIX_SP) found. No Rondeux volume columns created.
No valid Rondeux volumes computed. Columns not created.
Circumference constraint violated: 1 tree(s) have c130 < 10 cm or > 70 cm. Rondeux volumes will be set to NA for these rows: 1FALSE
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c7419508e.csv
No compatible species found for Vallet merchantable volume (vc22). No column created.
No compatible species found for Vallet merchantable volume (vc22). No column created.
  species_code dbh htot vallet_vc22
1  PICEA_ABIES  20   25   0.4435533
No compatible species found for Vallet merchantable volume (vc22). No column created.
No compatible species found for Vallet merchantable volume (vc22). No column created.
     species_code  dbh htot vallet_vc22
1     PICEA_ABIES 20.0   25   0.4435533
2 UNKNOWN_SPECIES 25.0   20          NA
3 FAGUS_SYLVATICA  6.4   22          NA
File written: D:/temp/2025_12_11_00_40_17_15463/Rtmpyg6V7D/file2f8c7b7020d0.csv
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c7b7020d0.csv
No compatible species found for Vallet VTA method. No column created.
No compatible species found for Vallet VTA method. No column created.
No compatible species found for Vallet VTA method. No column created.
No compatible species found for Vallet VTA method. No column created.
No compatible species found for Vallet VTA method. No column created.
File successfully written to: D:\temp\2025_12_11_00_40_17_15463\Rtmpyg6V7D\file2f8c433011d2.csv
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 301 ]
> 
> proc.time()
   user  system elapsed 
   8.78    0.50    9.26