* using log directory 'd:/RCompile/CRANincoming/R-devel/GBSel.Rcheck' * using R Under development (unstable) (2024-01-23 r85822 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'GBSel/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'GBSel' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Zhaoxuan Che <1062359669@qq.com>' New submission Possibly misspelled words in DESCRIPTION: KRR (8:223) SVR (8:260) genomic (3:10) The Title field should be in title case. Current version is: 'A genomic prediction method with gradient boosting stacking ensemble learning framework' In title case that is: 'A Genomic Prediction Method with Gradient Boosting Stacking Ensemble Learning Framework' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GBSel' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [27s] ERROR Running examples in 'GBSel-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: GBSel > ### Title: Perform GBSel to train and predict data sets > ### Aliases: GBSel > > ### ** Examples > > X <- genotype > X.FR <- Feature.reduce(X = X, method="GRM") > y.train <- phenotype[c(1:200),1] > X.train <- X.FR[c(1:200),] > X.test <- X.FR[-c(1:200),] > path <- reticulate::py_discover_config() > py.lib <- python.env(env="python", env.path=path$python, module.check=TRUE) Error in python.env(env = "python", env.path = path$python, module.check = TRUE) : scikit-learn has not been installed! Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE