installing dependencies ‘circlize’, ‘ComplexHeatmap’, ‘dendextend’, ‘gridExtra’, ‘magick’, ‘RColorBrewer’, ‘Rcpp’, ‘seriation’ also installing the dependencies ‘utf8’, ‘generics’, ‘farver’, ‘labeling’, ‘R6’, ‘fansi’, ‘pillar’, ‘pkgconfig’, ‘rjson’, ‘crayon’, ‘BiocGenerics’, ‘S4Vectors’, ‘iterators’, ‘cli’, ‘glue’, ‘lifecycle’, ‘rlang’, ‘isoband’, ‘scales’, ‘tibble’, ‘vctrs’, ‘withr’, ‘viridisLite’, ‘permute’, ‘GetoptLong’, ‘colorspace’, ‘clue’, ‘GlobalOptions’, ‘png’, ‘digest’, ‘IRanges’, ‘matrixStats’, ‘foreach’, ‘doParallel’, ‘gtable’, ‘magrittr’, ‘ggplot2’, ‘viridis’, ‘shape’, ‘ca’, ‘gclus’, ‘qap’, ‘registry’, ‘TSP’, ‘vegan’, ‘curl’ begin installing package ‘utf8’ begin installing package ‘generics’ begin installing package ‘farver’ begin installing package ‘labeling’ begin installing package ‘R6’ begin installing package ‘fansi’ begin installing package ‘pkgconfig’ begin installing package ‘rjson’ begin installing package ‘crayon’ begin installing package ‘iterators’ begin installing package ‘cli’ begin installing package ‘glue’ begin installing package ‘rlang’ begin installing package ‘isoband’ begin installing package ‘withr’ begin installing package ‘viridisLite’ begin installing package ‘permute’ begin installing package ‘colorspace’ begin installing package ‘clue’ begin installing package ‘GlobalOptions’ begin installing package ‘png’ begin installing package ‘digest’ begin installing package ‘matrixStats’ begin installing package ‘magrittr’ begin installing package ‘shape’ begin installing package ‘ca’ begin installing package ‘gclus’ begin installing package ‘qap’ * installing *source* package ‘pkgconfig’ ... ** this is package ‘pkgconfig’ version ‘2.0.3’ ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgconfig) begin installing package ‘registry’ * installing *source* package ‘viridisLite’ ... ** this is package ‘viridisLite’ version ‘0.4.2’ ** package ‘viridisLite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridisLite) begin installing package ‘curl’ * installing *source* package ‘magrittr’ ... ** this is package ‘magrittr’ version ‘2.0.3’ ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3r1Crj/R.INSTALL3fc0013a7218d7/magrittr/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pipe.c -o pipe.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o magrittr.so pipe.o utils.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3r1Crj/R.INSTALL3fc0013a7218d7/magrittr/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) begin installing package ‘Rcpp’ * installing *source* package ‘generics’ ... ** this is package ‘generics’ version ‘0.1.4’ ** package ‘generics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (generics) begin installing package ‘RColorBrewer’ * installing *source* package ‘png’ ... ** this is package ‘png’ version ‘0.1-8’ ** package ‘png’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpO2qext/R.INSTALL3fbff554feb0ad/png/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dummy.c -o dummy.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c read.c -o read.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c write.c -o write.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o png.so dummy.o read.o write.o -lpng16 -lz -lm -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpO2qext/R.INSTALL3fbff554feb0ad/png/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-png/00new/png/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (png) begin installing package ‘BiocGenerics’ * installing *source* package ‘iterators’ ... ** this is package ‘iterators’ version ‘1.0.14’ ** package ‘iterators’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iterators) begin installing package ‘foreach’ * installing *source* package ‘qap’ ... ** this is package ‘qap’ version ‘0.1-2’ ** package ‘qap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY2vU4t/R.INSTALL3fc005a1801db/qap/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c RNG_wrapper.c -o RNG_wrapper.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c qapsim.f -o qapsim.o qapsim.f:81:14: 81 | i1 = x*n + .5 | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] qapsim.f:86:14: 86 | i2 = x*n + .5 | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] qapsim.f:136:11: 136 | m1 = m1 * fiter | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o qap.so RNG_wrapper.o init.o qapsim.o -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY2vU4t/R.INSTALL3fc005a1801db/qap/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-qap/00new/qap/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qap) * installing *source* package ‘labeling’ ... ** this is package ‘labeling’ version ‘0.4.3’ ** package ‘labeling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labeling) * installing *source* package ‘R6’ ... ** this is package ‘R6’ version ‘2.6.1’ ** package ‘R6’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6) * installing *source* package ‘gclus’ ... ** this is package ‘gclus’ version ‘1.3.3’ ** package ‘gclus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gclus) * installing *source* package ‘glue’ ... ** this is package ‘glue’ version ‘1.8.0’ ** package ‘glue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpox7cNn/R.INSTALL3fbfb618f022a3/glue/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c glue.c -o glue.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c trim.c -o trim.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o glue.so glue.o init.o trim.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpox7cNn/R.INSTALL3fbfb618f022a3/glue/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glue) * installing *source* package ‘shape’ ... ** this is package ‘shape’ version ‘1.4.6.1’ ** package ‘shape’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shape) * installing *source* package ‘withr’ ... ** this is package ‘withr’ version ‘3.0.2’ ** package ‘withr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (withr) * installing *source* package ‘GlobalOptions’ ... ** this is package ‘GlobalOptions’ version ‘0.1.2’ ** package ‘GlobalOptions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GlobalOptions) * installing *source* package ‘rjson’ ... ** this is package ‘rjson’ version ‘0.2.23’ ** package ‘rjson’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2ElOfc/R.INSTALL3fbfc21b9844c4/rjson/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c dump.cpp -o dump.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c parser.c -o parser.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c register.c -o register.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o rjson.so dump.o parser.o register.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2ElOfc/R.INSTALL3fbfc21b9844c4/rjson/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-rjson/00new/rjson/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rjson) * installing *source* package ‘crayon’ ... ** this is package ‘crayon’ version ‘1.5.3’ ** package ‘crayon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crayon) begin installing package ‘GetoptLong’ * installing *source* package ‘permute’ ... ** this is package ‘permute’ version ‘0.9-7’ ** package ‘permute’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (permute) begin installing package ‘vegan’ * installing *source* package ‘registry’ ... ** this is package ‘registry’ version ‘0.5-1’ ** package ‘registry’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (registry) * installing *source* package ‘utf8’ ... ** this is package ‘utf8’ version ‘1.2.5’ ** package ‘utf8’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZyKUIu/R.INSTALL3fbfa51c6c0be0/utf8/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c as_utf8.c -o as_utf8.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bytes.c -o bytes.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c context.c -o context.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c render.c -o render.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c render_table.c -o render_table.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c string.c -o string.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c text.c -o text.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_encode.c -o utf8_encode.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_format.c -o utf8_format.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_normalize.c -o utf8_normalize.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_valid.c -o utf8_valid.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_width.c -o utf8_width.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c util.c -o util.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/array.c -o utf8lite/src/array.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/char.c -o utf8lite/src/char.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/encode.c -o utf8lite/src/encode.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/error.c -o utf8lite/src/error.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/escape.c -o utf8lite/src/escape.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/graph.c -o utf8lite/src/graph.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/render.c -o utf8lite/src/render.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/text.c -o utf8lite/src/text.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZyKUIu/R.INSTALL3fbfa51c6c0be0/utf8/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-utf8/00new/utf8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (utf8) * installing *source* package ‘foreach’ ... ** this is package ‘foreach’ version ‘1.5.2’ ** package ‘foreach’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foreach) begin installing package ‘doParallel’ begin installing package ‘TSP’ * installing *source* package ‘RColorBrewer’ ... ** this is package ‘RColorBrewer’ version ‘1.1-3’ ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorBrewer) * installing *source* package ‘fansi’ ... ** this is package ‘fansi’ version ‘1.0.6’ ** package ‘fansi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcPoajO/R.INSTALL3fbfb336d5dbb2/fansi/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c assumptions.c -o assumptions.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c carry.c -o carry.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c has.c -o has.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nchar.c -o nchar.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c normalize.c -o normalize.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c read.c -o read.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rnchar.c -o rnchar.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c state.c -o state.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c strip.c -o strip.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c substr.c -o substr.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tabs.c -o tabs.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tohtml.c -o tohtml.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c trimws.c -o trimws.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c unhandled.c -o unhandled.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8.c -o utf8.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c wrap.c -o wrap.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c write.c -o write.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o fansi.so assumptions.o carry.o has.o init.o nchar.o normalize.o read.o rnchar.o state.o strip.o substr.o tabs.o tohtml.o trimws.o unhandled.o utf8.o utils.o wrap.o write.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcPoajO/R.INSTALL3fbfb336d5dbb2/fansi/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-fansi/00new/fansi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fansi) * installing *source* package ‘ca’ ... ** this is package ‘ca’ version ‘0.71.1’ ** package ‘ca’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ca) * installing *source* package ‘curl’ ... ** this is package ‘curl’ version ‘6.2.3’ ** package ‘curl’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 Using PKG_LIBS=-lcurl Found recent recent version of libcurl ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCJpzL7/R.INSTALL3fc2f871aed029/curl/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c callbacks.c -o callbacks.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c curl.c -o curl.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c download.c -o download.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dryrun.c -o dryrun.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c escape.c -o escape.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fetch.c -o fetch.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c findport.c -o findport.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c form.c -o form.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c getdate.c -o getdate.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c handle.c -o handle.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ieproxy.c -o ieproxy.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c interrupt.c -o interrupt.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c multi.c -o multi.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nslookup.c -o nslookup.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c options.c -o options.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c reflist.c -o reflist.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c split.c -o split.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ssl.c -o ssl.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c typechecking.c -o typechecking.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c urlparser.c -o urlparser.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c version.c -o version.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c winidn.c -o winidn.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c writer.c -o writer.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o curl.so callbacks.o curl.o download.o dryrun.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o -lcurl -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCJpzL7/R.INSTALL3fc2f871aed029/curl/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-curl/00new/curl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (curl) * installing *source* package ‘doParallel’ ... ** this is package ‘doParallel’ version ‘1.0.17’ ** package ‘doParallel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doParallel) * installing *source* package ‘GetoptLong’ ... ** this is package ‘GetoptLong’ version ‘1.0.5’ ** package ‘GetoptLong’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GetoptLong) * installing *source* package ‘TSP’ ... ** this is package ‘TSP’ version ‘1.2-5’ ** package ‘TSP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpk2YC2X/R.INSTALL3fc7ce7d45cade/TSP/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dll.c -o dll.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c insertion_cost.c -o insertion_cost.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tour_length.c -o tour_length.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c two_opt.c -o two_opt.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o TSP.so dll.o insertion_cost.o tour_length.o two_opt.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpk2YC2X/R.INSTALL3fc7ce7d45cade/TSP/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-TSP/00new/TSP/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TSP) * installing *source* package ‘BiocGenerics’ ... ** this is package ‘BiocGenerics’ version ‘0.54.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘BiocGenerics’ Creating a new generic function for ‘append’ in package ‘BiocGenerics’ Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’ Creating a new generic function for ‘cbind’ in package ‘BiocGenerics’ Creating a new generic function for ‘rbind’ in package ‘BiocGenerics’ Creating a new generic function for ‘do.call’ in package ‘BiocGenerics’ Creating a new generic function for ‘duplicated’ in package ‘BiocGenerics’ Creating a new generic function for ‘anyDuplicated’ in package ‘BiocGenerics’ Creating a new generic function for ‘eval’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmax’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmin’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmax.int’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmin.int’ in package ‘BiocGenerics’ Creating a new generic function for ‘Reduce’ in package ‘BiocGenerics’ Creating a new generic function for ‘Filter’ in package ‘BiocGenerics’ Creating a new generic function for ‘Find’ in package ‘BiocGenerics’ Creating a new generic function for ‘Map’ in package ‘BiocGenerics’ Creating a new generic function for ‘Position’ in package ‘BiocGenerics’ Creating a new generic function for ‘get’ in package ‘BiocGenerics’ Creating a new generic function for ‘mget’ in package ‘BiocGenerics’ Creating a new generic function for ‘grep’ in package ‘BiocGenerics’ Creating a new generic function for ‘grepl’ in package ‘BiocGenerics’ Creating a new generic function for ‘is.unsorted’ in package ‘BiocGenerics’ Creating a new generic function for ‘lapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘sapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘mapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘match’ in package ‘BiocGenerics’ Creating a new generic function for ‘order’ in package ‘BiocGenerics’ Creating a new generic function for ‘paste’ in package ‘BiocGenerics’ Creating a new generic function for ‘rank’ in package ‘BiocGenerics’ Creating a new generic function for ‘rownames’ in package ‘BiocGenerics’ Creating a new generic function for ‘colnames’ in package ‘BiocGenerics’ Creating a new generic function for ‘saveRDS’ in package ‘BiocGenerics’ Creating a new generic function for ‘table’ in package ‘BiocGenerics’ Creating a new generic function for ‘tapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘unique’ in package ‘BiocGenerics’ Creating a new generic function for ‘unsplit’ in package ‘BiocGenerics’ Creating a new generic function for ‘which.min’ in package ‘BiocGenerics’ Creating a new generic function for ‘which.max’ in package ‘BiocGenerics’ Creating a new generic function for ‘IQR’ in package ‘BiocGenerics’ Creating a new generic function for ‘mad’ in package ‘BiocGenerics’ Creating a new generic function for ‘var’ in package ‘BiocGenerics’ Creating a new generic function for ‘sd’ in package ‘BiocGenerics’ Creating a new generic function for ‘xtabs’ in package ‘BiocGenerics’ Creating a new generic function for ‘basename’ in package ‘BiocGenerics’ Creating a new generic function for ‘dirname’ in package ‘BiocGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocGenerics) begin installing package ‘S4Vectors’ * installing *source* package ‘clue’ ... ** this is package ‘clue’ version ‘0.3-66’ ** package ‘clue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8NRBbT/R.INSTALL3fbff7596f8bfa/clue/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c assignment.c -o assignment.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c clue.c -o clue.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lsap.c -o lsap.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c trees.c -o trees.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o clue.so assignment.o clue.o init.o lsap.o trees.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8NRBbT/R.INSTALL3fbff7596f8bfa/clue/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-clue/00new/clue/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clue) * installing *source* package ‘isoband’ ... ** this is package ‘isoband’ version ‘0.2.7’ ** package ‘isoband’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbpL4xN/R.INSTALL3fbfdc60bf80c2/isoband/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c clip-lines.cpp -o clip-lines.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c init.cpp -o init.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c isoband.cpp -o isoband.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c polygon.cpp -o polygon.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c separate-polygons.cpp -o separate-polygons.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-clip-lines.cpp -o test-clip-lines.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-runner.cpp -o test-runner.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-separate-polygons.cpp -o test-separate-polygons.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o isoband.so clip-lines.o init.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbpL4xN/R.INSTALL3fbfdc60bf80c2/isoband/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-isoband/00new/isoband/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isoband) * installing *source* package ‘digest’ ... ** this is package ‘digest’ version ‘0.6.37’ ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE5Fzlc/R.INSTALL3fbff46875a902/digest/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c SpookyV2.cpp -o SpookyV2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c aes.c -o aes.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c blake3.c -o blake3.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c blake3_dispatch.c -o blake3_dispatch.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c blake3_portable.c -o blake3_portable.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c crc32.c -o crc32.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c crc32c.cpp -o crc32c.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c crc32c_portable.cpp -o crc32c_portable.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c digest.c -o digest.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c digest2int.c -o digest2int.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c md5.c -o md5.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pmurhash.c -o pmurhash.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c raes.c -o raes.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha1.c -o sha1.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha2.c -o sha2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha256.c -o sha256.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c spooky_serialize.cpp -o spooky_serialize.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xxhash.c -o xxhash.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o crc32c.o crc32c_portable.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE5Fzlc/R.INSTALL3fbff46875a902/digest/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (digest) * installing *source* package ‘colorspace’ ... ** this is package ‘colorspace’ version ‘2.1-1’ ** package ‘colorspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHSco8C/R.INSTALL3fbfe84b9710f3/colorspace/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c colorspace.c -o colorspace.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o colorspace.so colorspace.o init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHSco8C/R.INSTALL3fbfe84b9710f3/colorspace/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) begin installing package ‘circlize’ * installing *source* package ‘cli’ ... ** this is package ‘cli’ version ‘3.6.5’ ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpokElP3/R.INSTALL3fbfae65470218/cli/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ansi.c -o ansi.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cleancall.c -o cleancall.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c diff.c -o diff.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c errors.c -o errors.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c glue.c -o glue.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c inst.c -o inst.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c keypress-unix.c -o keypress-unix.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c keypress-win.c -o keypress-win.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c keypress.c -o keypress.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c md5.c -o md5.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c progress-altrep.c -o progress-altrep.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c progress.c -o progress.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha1.c -o sha1.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha256.c -o sha256.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c thread.c -o thread.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tty.c -o tty.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8.c -o utf8.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vt.c -o vt.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vtparse.c -o vtparse.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vtparse_table.c -o vtparse_table.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c win-utf8.c -o win-utf8.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c winfiles.c -o winfiles.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xxhash.c -o xxhash.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xxhash2.c -o xxhash2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o xxhash.o xxhash2.o -lpthread -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpokElP3/R.INSTALL3fbfae65470218/cli/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-cli/00new/cli/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) * installing *source* package ‘rlang’ ... ** this is package ‘rlang’ version ‘1.1.6’ ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7nCvPR/R.INSTALL3fbfd4f5fc191/rlang/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c capture.c -o capture.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c internal.c -o internal.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rlang.c -o rlang.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c version.c -o version.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o rlang.so capture.o internal.o rlang.o version.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7nCvPR/R.INSTALL3fbfd4f5fc191/rlang/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) begin installing package ‘lifecycle’ * installing *source* package ‘matrixStats’ ... ** this is package ‘matrixStats’ version ‘1.5.0’ ** package ‘matrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpP2jqYS/R.INSTALL3fbfff4860857a/matrixStats/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c 000.init.c -o 000.init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c allocMatrix2.c -o allocMatrix2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c anyMissing.c -o anyMissing.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c binCounts.c -o binCounts.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c binMeans.c -o binMeans.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c colCounts.c -o colCounts.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c colOrderStats.c -o colOrderStats.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c colRanges.c -o colRanges.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c diff2.c -o diff2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c indexByRow.c -o indexByRow.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c logSumExp.c -o logSumExp.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c mean2.c -o mean2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c naming.c -o naming.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c productExpSumLog.c -o productExpSumLog.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c psortKM.c -o psortKM.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowCounts.c -o rowCounts.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowCummaxs.c -o rowCummaxs.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowCummins.c -o rowCummins.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowCumprods.c -o rowCumprods.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowCumsums.c -o rowCumsums.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowDiffs.c -o rowDiffs.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowLogSumExp.c -o rowLogSumExp.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowMads.c -o rowMads.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowMeans2.c -o rowMeans2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowMedians.c -o rowMedians.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowOrderStats.c -o rowOrderStats.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowRanges.c -o rowRanges.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowRanksWithTies.c -o rowRanksWithTies.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowSums2.c -o rowSums2.o In file included from rowSums2_lowlevel.h:14, from rowSums2.c:12: rowSums2_lowlevel_template.h: In function ‘rowSums2_int’: rowSums2_lowlevel_template.h:96:19: warning: ‘rowSum’ may be used uninitialized [-Wmaybe-uninitialized] 96 | rowSum[ii] = R_NaReal; | ^ rowSums2_lowlevel_template.h:35:14: note: ‘rowSum’ was declared here 35 | LDOUBLE *rowSum; | ^~~~~~ In file included from rowSums2_lowlevel.h:18: rowSums2_lowlevel_template.h: In function ‘rowSums2_dbl’: rowSums2_lowlevel_template.h:114:19: warning: ‘rowSum’ may be used uninitialized [-Wmaybe-uninitialized] 114 | rowSum[ii] += (LDOUBLE)value; | ~~~~~~^~~~ rowSums2_lowlevel_template.h:35:14: note: ‘rowSum’ was declared here 35 | LDOUBLE *rowSum; | ^~~~~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowVars.c -o rowVars.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c signTabulate.c -o signTabulate.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sum2.c -o sum2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c validateIndices.c -o validateIndices.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c weightedMean.c -o weightedMean.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c weightedMedian.c -o weightedMedian.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c x_OP_y.c -o x_OP_y.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpP2jqYS/R.INSTALL3fbfff4860857a/matrixStats/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-matrixStats/00new/matrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixStats) * installing *source* package ‘lifecycle’ ... ** this is package ‘lifecycle’ version ‘1.0.4’ ** package ‘lifecycle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lifecycle) begin installing package ‘vctrs’ begin installing package ‘gtable’ * installing *source* package ‘gtable’ ... ** this is package ‘gtable’ version ‘0.3.6’ ** package ‘gtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtable) begin installing package ‘gridExtra’ * installing *source* package ‘circlize’ ... ** this is package ‘circlize’ version ‘0.4.16’ ** package ‘circlize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (circlize) * installing *source* package ‘Rcpp’ ... ** this is package ‘Rcpp’ version ‘1.0.14’ ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnpriPA/R.INSTALL3fc35f28abe1aa/Rcpp/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c api.cpp -o api.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c attributes.cpp -o attributes.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c barrier.cpp -o barrier.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c date.cpp -o date.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c module.cpp -o module.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c rcpp_init.cpp -o rcpp_init.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnpriPA/R.INSTALL3fc35f28abe1aa/Rcpp/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) begin installing package ‘magick’ * installing *source* package ‘gridExtra’ ... ** this is package ‘gridExtra’ version ‘2.3’ ** package ‘gridExtra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridExtra) * installing *source* package ‘vegan’ ... ** this is package ‘vegan’ version ‘2.7-1’ ** package ‘vegan’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3If3nx/R.INSTALL3fc71e3ebf06a3/vegan/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c data2hill.c -o data2hill.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c decorana.f -o decorana.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c getF.c -o getF.o getF.c: In function ‘do_getF’: getF.c:433:13: warning: ‘wperm’ may be used uninitialized [-Wmaybe-uninitialized] 433 | wcentre(Xorig, qr, wperm, &nr, &nx); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ getF.c:344:13: note: ‘wperm’ was declared here 344 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~ getF.c:432:13: warning: ‘Xorig’ may be used uninitialized [-Wmaybe-uninitialized] 432 | memcpy(qr, Xorig, nr * nx * sizeof(double)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ getF.c:344:21: note: ‘Xorig’ was declared here 344 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~ getF.c:394:44: warning: ‘Zorig’ may be used uninitialized [-Wmaybe-uninitialized] 394 | Zperm[i + nr*j] = Zorig[ki + nr*j]; | ^ getF.c:344:29: note: ‘Zorig’ was declared here 344 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~ getF.c:394:26: warning: ‘Zperm’ may be used uninitialized [-Wmaybe-uninitialized] 394 | Zperm[i + nr*j] = Zorig[ki + nr*j]; | ^ getF.c:344:37: note: ‘Zperm’ was declared here 344 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~ In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:78, from getF.c:11: getF.c:443:22: warning: ‘qrwork’ may be used uninitialized [-Wmaybe-uninitialized] 443 | F77_CALL(dqrdc2)(qr, &nr, &nr, &nx, &qrtol, &qrank, | ^ /home/hornik/tmp/R-d-gcc-xtra/include/R_ext/RS.h:98:25: note: in definition of macro ‘F77_CALL’ 98 | # define F77_CALL(x) x ## _ | ^ getF.c:344:45: note: ‘qrwork’ was declared here 344 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c goffactor.c -o goffactor.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c monoMDS.f -o monoMDS.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nestedness.c -o nestedness.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c ordering.f -o ordering.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pnpoly.c -o pnpoly.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c stepacross.c -o stepacross.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vegdist.c -o vegdist.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o vegan.so data2hill.o decorana.o getF.o goffactor.o init.o monoMDS.o nestedness.o ordering.o pnpoly.o stepacross.o vegdist.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3If3nx/R.INSTALL3fc71e3ebf06a3/vegan/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-vegan/00new/vegan/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vegan) begin installing package ‘seriation’ * installing *source* package ‘S4Vectors’ ... ** this is package ‘S4Vectors’ version ‘0.46.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQ9O8g6/R.INSTALL3fc9f37b4e5bb8/S4Vectors/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c AEbufs.c -o AEbufs.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c DataFrame_class.c -o DataFrame_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Hits_class.c -o Hits_class.o In file included from /home/hornik/tmp/R-d-gcc-xtra/include/Rdefines.h:41, from ../inst/include/S4Vectors_defines.h:18, from S4Vectors.h:1, from Hits_class.c:4: Hits_class.c: In function ‘Hits_new’: /home/hornik/tmp/R-d-gcc-xtra/include/Rinternals.h:926:33: warning: ‘revmap’ may be used uninitialized [-Wmaybe-uninitialized] 926 | #define defineVar Rf_defineVar Hits_class.c:244:9: note: in expansion of macro ‘defineVar’ 244 | defineVar(install(translateChar(symbol)), revmap, revmap_envir); | ^~~~~~~~~ Hits_class.c:219:19: note: ‘revmap’ was declared here 219 | SEXP ans, revmap, symbol; | ^~~~~~ Hits_class.c: In function ‘select_hits’: Hits_class.c:348:48: warning: ‘is_used’ may be used uninitialized [-Wmaybe-uninitialized] 348 | is_used->elts[ans_elt - 1] = 1; | ~~~~~~~^~~~~~ Hits_class.c:313:17: note: ‘is_used’ was declared here 313 | CharAE *is_used; | ^~~~~~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c LLint_class.c -o LLint_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c List_class.c -o List_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R_init_S4Vectors.c -o R_init_S4Vectors.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Rle_class.c -o Rle_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Rle_utils.c -o Rle_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SEXP_utils.c -o SEXP_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SimpleList_class.c -o SimpleList_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c anyMissing.c -o anyMissing.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c character_utils.c -o character_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c eval_utils.c -o eval_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c hash_utils.c -o hash_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c integer_utils.c -o integer_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c logical_utils.c -o logical_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c map_ranges_to_runs.c -o map_ranges_to_runs.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c raw_utils.c -o raw_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c safe_arithm.c -o safe_arithm.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sort_utils.c -o sort_utils.o sort_utils.c:267:13: warning: ‘sort_uchar_array’ defined but not used [-Wunused-function] 267 | static void sort_uchar_array(unsigned char *x, int nelt, int desc) | ^~~~~~~~~~~~~~~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c subsetting_utils.c -o subsetting_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vector_utils.c -o vector_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQ9O8g6/R.INSTALL3fc9f37b4e5bb8/S4Vectors/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-S4Vectors/00new/S4Vectors/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘normalizeSingleBracketReplacementValue’ with signature ‘"List"’: no definition for class “List” Creating a new generic function for ‘unname’ in package ‘S4Vectors’ Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’ Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"Hits","DFrame"’: no definition for class “DFrame” Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"data.table","DFrame"’: no definition for class “data.table” Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (S4Vectors) begin installing package ‘IRanges’ * installing *source* package ‘vctrs’ ... ** this is package ‘vctrs’ version ‘0.6.5’ ** package ‘vctrs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdlAFkX/R.INSTALL3fcc0a90941c/vctrs/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep-lazy-character.c -o altrep-lazy-character.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep-rle.c -o altrep-rle.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep.c -o altrep.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c arg-counter.c -o arg-counter.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c arg.c -o arg.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c assert.c -o assert.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bind.c -o bind.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c c-unchop.c -o c-unchop.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c c.c -o c.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c callables.c -o callables.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cast-bare.c -o cast-bare.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cast-dispatch.c -o cast-dispatch.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cast.c -o cast.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c compare.c -o compare.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c complete.c -o complete.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c conditions.c -o conditions.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dictionary.c -o dictionary.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dim.c -o dim.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c empty.c -o empty.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c equal.c -o equal.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c expand.c -o expand.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fields.c -o fields.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fill.c -o fill.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c globals.c -o globals.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c group.c -o group.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c growable.c -o growable.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c hash.c -o hash.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c interval.c -o interval.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c match-joint.c -o match-joint.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c match.c -o match.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c missing.c -o missing.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c names.c -o names.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order-collate.c -o order-collate.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order-groups.c -o order-groups.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order-sortedness.c -o order-sortedness.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order-truelength.c -o order-truelength.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order.c -o order.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c poly-op.c -o poly-op.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c proxy-restore.c -o proxy-restore.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c proxy.c -o proxy.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ptype-common.c -o ptype-common.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ptype.c -o ptype.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ptype2-dispatch.c -o ptype2-dispatch.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ptype2.c -o ptype2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rank.c -o rank.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rep.c -o rep.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rlang-dev.c -o rlang-dev.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rlang.c -o rlang.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c runs.c -o runs.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c set.c -o set.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c shape.c -o shape.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c size-common.c -o size-common.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c size.c -o size.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-array.c -o slice-array.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-assign-array.c -o slice-assign-array.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-assign.c -o slice-assign.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-chop.c -o slice-chop.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-interleave.c -o slice-interleave.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice.c -o slice.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c split.c -o split.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c subscript-loc.c -o subscript-loc.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c subscript.c -o subscript.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c translate.c -o translate.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-data-frame.c -o type-data-frame.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-date-time.c -o type-date-time.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-factor.c -o type-factor.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-info.c -o type-info.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-integer64.c -o type-integer64.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-tibble.c -o type-tibble.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c typeof2-s3.c -o typeof2-s3.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c typeof2.c -o typeof2.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c unspecified.c -o unspecified.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils-dispatch.c -o utils-dispatch.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vctrs-core.c -o vctrs-core.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c version.c -o version.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o vctrs.so altrep-lazy-character.o altrep-rle.o altrep.o arg-counter.o arg.o assert.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o empty.o equal.o expand.o fields.o fill.o globals.o group.o growable.o hash.o init.o interval.o match-joint.o match.o missing.o names.o order-collate.o order-groups.o order-sortedness.o order-truelength.o order.o poly-op.o proxy-restore.o proxy.o ptype-common.o ptype.o ptype2-dispatch.o ptype2.o rank.o rep.o rlang-dev.o rlang.o runs.o set.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice-interleave.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-integer64.o type-tibble.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o vctrs-core.o version.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdlAFkX/R.INSTALL3fcc0a90941c/vctrs/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-vctrs/00new/vctrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vctrs) begin installing package ‘pillar’ * installing *source* package ‘farver’ ... ** this is package ‘farver’ version ‘2.1.2’ ** package ‘farver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxffiBY/R.INSTALL3fbfa258e4d54a/farver/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ColorSpace.cpp -o ColorSpace.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Comparison.cpp -o Comparison.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Conversion.cpp -o Conversion.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c encode.cpp -o encode.o encode.cpp: In function ‘int double2int(double)’: encode.cpp:22:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 22 | return reinterpret_cast(d); | ^ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c farver.cpp -o farver.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c init.cpp -o init.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxffiBY/R.INSTALL3fbfa258e4d54a/farver/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-farver/00new/farver/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (farver) begin installing package ‘scales’ * installing *source* package ‘seriation’ ... ** this is package ‘seriation’ version ‘1.5.7’ ** package ‘seriation’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8hJ4GP/R.INSTALL3fd0c1276b8aad/seriation/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c RNG_wrapper.c -o RNG_wrapper.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c arsa.f -o arsa.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c bburcg.f -o bburcg.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c bbwrcg.f -o bbwrcg.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c criterion.c -o criterion.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dist.c -o dist.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nextperm.c -o nextperm.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c optimal.c -o optimal.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pathdist.c -o pathdist.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c stress.c -o stress.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o seriation.so RNG_wrapper.o arsa.o bburcg.o bbwrcg.o criterion.o dist.o init.o nextperm.o optimal.o pathdist.o stress.o -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8hJ4GP/R.INSTALL3fd0c1276b8aad/seriation/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-seriation/00new/seriation/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seriation) * installing *source* package ‘pillar’ ... ** this is package ‘pillar’ version ‘1.10.2’ ** package ‘pillar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pillar) begin installing package ‘tibble’ * installing *source* package ‘scales’ ... ** this is package ‘scales’ version ‘1.4.0’ ** package ‘scales’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) * installing *source* package ‘tibble’ ... ** this is package ‘tibble’ version ‘3.2.1’ ** package ‘tibble’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMEds6s/R.INSTALL3fd34112ea72b0/tibble/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c attributes.c -o attributes.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c coerce.c -o coerce.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c matrixToDataFrame.c -o matrixToDataFrame.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMEds6s/R.INSTALL3fd34112ea72b0/tibble/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-tibble/00new/tibble/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tibble) begin installing package ‘ggplot2’ * installing *source* package ‘magick’ ... ** this is package ‘magick’ version ‘2.8.6’ ** package ‘magick’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 Using PKG_LIBS=-lMagick++-7.Q16 -lMagickWand-7.Q16 -lMagickCore-7.Q16 ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp00V6bN/R.INSTALL3fceea41fa24a6/magick/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c animation.cpp -o animation.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c attributes.cpp -o attributes.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c base.cpp -o base.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c color.cpp -o color.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c composite.cpp -o composite.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c config.cc -o config.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c convolve.cpp -o convolve.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c device.cpp -o device.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c edges.cpp -o edges.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c edit.cpp -o edit.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fonts.cpp -o fonts.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c options.cpp -o options.o options.cpp: In function ‘Rcpp::DataFrame list_font_info()’: options.cpp:37:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 37 | for (int i = 0; i < number_fonts; i++){ | ~~^~~~~~~~~~~~~~ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c properties.cpp -o properties.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c resize.cpp -o resize.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c segment.cpp -o segment.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c transformations.cpp -o transformations.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o magick.so RcppExports.o animation.o attributes.o base.o color.o composite.o config.o convolve.o device.o edges.o edit.o fonts.o options.o properties.o resize.o segment.o transformations.o -lMagick++-7.Q16 -lMagickWand-7.Q16 -lMagickCore-7.Q16 -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp00V6bN/R.INSTALL3fceea41fa24a6/magick/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-magick/00new/magick/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magick) * installing *source* package ‘ggplot2’ ... ** this is package ‘ggplot2’ version ‘3.5.2’ ** package ‘ggplot2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2) begin installing package ‘viridis’ * installing *source* package ‘viridis’ ... ** this is package ‘viridis’ version ‘0.6.5’ ** package ‘viridis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridis) begin installing package ‘dendextend’ * installing *source* package ‘dendextend’ ... ** this is package ‘dendextend’ version ‘1.19.0’ ** package ‘dendextend’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dendextend) * installing *source* package ‘IRanges’ ... ** this is package ‘IRanges’ version ‘2.42.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbN9gBN/R.INSTALL3fd11a31461d31/IRanges/src' gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c CompressedList_class.c -o CompressedList_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Grouping_class.c -o Grouping_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IPosRanges_comparison.c -o IPosRanges_comparison.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IRanges_class.c -o IRanges_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IRanges_constructor.c -o IRanges_constructor.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c NCList.c -o NCList.o NCList.c:1173:13: warning: ‘NCList_get_y_overlaps_rec’ defined but not used [-Wunused-function] 1173 | static void NCList_get_y_overlaps_rec(const NCList *x_nclist, | ^~~~~~~~~~~~~~~~~~~~~~~~~ NCList.c:202:22: warning: ‘next_top_down’ defined but not used [-Wunused-function] 202 | static const NCList *next_top_down(const NCList *nclist) | ^~~~~~~~~~~~~ NCList.c: In function ‘C_find_overlaps_in_groups_NCList’: NCList.c:1608:24: warning: ‘ans’ may be used uninitialized [-Wmaybe-uninitialized] 1608 | return ans; | ^~~ NCList.c:1546:14: note: ‘ans’ was declared here 1546 | SEXP ans; | ^~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R_init_IRanges.c -o R_init_IRanges.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Ranges_class.c -o Ranges_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c RleViews_utils.c -o RleViews_utils.o In function ‘viewWhichMaxs_int_RleViews’, inlined from ‘viewWhichMaxs_RleViews’ at RleViews_utils.c:579:3, inlined from ‘C_summarize_RleViews’ at RleViews_utils.c:694:9: RleViews_utils.c:325:54: warning: ‘max’ may be used uninitialized [-Wmaybe-uninitialized] 325 | if (!max_is_initialized || v > max) { | ~~^~~~~ RleViews_utils.c: In function ‘C_summarize_RleViews’: RleViews_utils.c:316:21: note: ‘max’ was declared here 316 | int max; /* uninitialized */ | ^~~ In function ‘viewWhichMins_int_RleViews’, inlined from ‘viewWhichMins_RleViews’ at RleViews_utils.c:546:3, inlined from ‘C_summarize_RleViews’ at RleViews_utils.c:686:9: RleViews_utils.c:293:54: warning: ‘min’ may be used uninitialized [-Wmaybe-uninitialized] 293 | if (!min_is_initialized || v < min) { | ~~^~~~~ RleViews_utils.c: In function ‘C_summarize_RleViews’: RleViews_utils.c:284:21: note: ‘min’ was declared here 284 | int min; /* uninitialized */ | ^~~ In function ‘viewMaxs_int_RleViews’, inlined from ‘viewMaxs_RleViews’ at RleViews_utils.c:443:3, inlined from ‘C_summarize_RleViews’ at RleViews_utils.c:665:9: RleViews_utils.c:67:54: warning: ‘max’ may be used uninitialized [-Wmaybe-uninitialized] 67 | if (!max_is_initialized || v > max) { | ~~^~~~~ RleViews_utils.c: In function ‘C_summarize_RleViews’: RleViews_utils.c:54:21: note: ‘max’ was declared here 54 | int max; /* uninitialized */ | ^~~ In function ‘viewMins_int_RleViews’, inlined from ‘viewMins_RleViews’ at RleViews_utils.c:413:3, inlined from ‘C_summarize_RleViews’ at RleViews_utils.c:660:9: RleViews_utils.c:36:54: warning: ‘min’ may be used uninitialized [-Wmaybe-uninitialized] 36 | if (!min_is_initialized || v < min) { | ~~^~~~~ RleViews_utils.c: In function ‘C_summarize_RleViews’: RleViews_utils.c:23:21: note: ‘min’ was declared here 23 | int min; /* uninitialized */ | ^~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c coverage_methods.c -o coverage_methods.o In function ‘shift_and_clip_ranges’, inlined from ‘compute_coverage_from_IRanges_holder’ at coverage_methods.c:609:12: coverage_methods.c:579:35: warning: ‘x_end’ may be used uninitialized [-Wmaybe-uninitialized] 579 | if (*out_ranges_are_tiles && x_end != cvg_len) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ coverage_methods.c: In function ‘compute_coverage_from_IRanges_holder’: coverage_methods.c:495:28: note: ‘x_end’ was declared here 495 | i, j, x_start, x_end, shift_elt, tmp; | ^~~~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extractListFragments.c -o extractListFragments.o extractListFragments.c: In function ‘C_find_partition_overlaps’: extractListFragments.c:85:25: warning: ‘split_partitions_buf’ may be used uninitialized [-Wmaybe-uninitialized] 85 | IntAE_insert_at(split_partitions_buf, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 | IntAE_get_nelt(split_partitions_buf), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 | q_prev_end); | ~~~~~~~~~~~ extractListFragments.c:35:16: note: ‘split_partitions_buf’ was declared here 35 | IntAE *split_partitions_buf; | ^~~~~~~~~~~~~~~~~~~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c inter_range_methods.c -o inter_range_methods.o inter_range_methods.c: In function ‘reduce_ranges.isra’: inter_range_methods.c:154:39: warning: ‘gapwidth’ may be used uninitialized [-Wmaybe-uninitialized] 154 | delta += gapwidth; | ~~~~~~^~~~~~~~~~~ inter_range_methods.c:102:38: note: ‘gapwidth’ was declared here 102 | append_or_drop, max_end, gapwidth, delta, width_inc; | ^~~~~~~~ gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbN9gBN/R.INSTALL3fd11a31461d31/IRanges/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-IRanges/00new/IRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘startsWith’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘endsWith’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRanges) begin installing package ‘ComplexHeatmap’ * installing *source* package ‘ComplexHeatmap’ ... ** this is package ‘ComplexHeatmap’ version ‘2.24.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ComplexHeatmap) checking GAPR_0.1.4.tar.gz ... Depends: Package: GAPR Imports: Rcpp, ComplexHeatmap, RColorBrewer, gridExtra, grid, dendextend, circlize, seriation, magick, LinkingTo: Rcpp Timings: user system elapsed GAPR 270.072 21.793 292.666 Results: Check status summary: OK Source packages 1 Check results summary: GAPR ... OK