Package check result: ERROR Check: examples, Result: ERROR Running examples in ‘GAPR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: GAP > ### Title: Generalized Association Plots (GAP) > ### Aliases: GAP > > ### ** Examples > > # Example using the crabs dataset from the MASS package > if (requireNamespace("MASS", quietly = TRUE)) { + df_crabs <- MASS::crabs + CRAB_result <- GAP( + data = df_crabs, + YdNum = c(1,2), # First two columns as Y discrete covariates + YcNum = 3, # Third column as Y continuous covariate + row.name = c(1,2,3), # Use First three columns as row names + row.prox = "euclidean", + col.prox = "euclidean", + row.order = "average", + col.order = "average", + row.flip = "r2e", + col.flip = "r2e", + border = TRUE, + border.width = 1, + exp.row_order = TRUE, + exp.column_order = TRUE, + exp.row_names = TRUE, + exp.column_names = TRUE, + exp.Yd_codebook = TRUE, + exp.Yd = TRUE, + exp.Yc = TRUE, + exp.originalmatrix = TRUE, + exp.row_prox = TRUE, + exp.col_prox = TRUE, + PNGfilename = file.path(tempdir(), "output_plot.png"), + show.plot = TRUE + ) + + # Access exported results: + CRAB_result$row_order # Row order after ordering + CRAB_result$column_order # Column order after ordering + CRAB_result$row_names # Row names after ordering + CRAB_result$column_names # Column names after ordering + CRAB_result$Yd_codebook # Codebook for Y discrete covariates + CRAB_result$Yd # Y discrete covariates after ordering + CRAB_result$Yc # Y continuous covariates after ordering + CRAB_result$originalmatrix # Original matrix (after ordering) + CRAB_result$row_prox # Row proximity matrix (after ordering) + CRAB_result$col_prox # Column proximity matrix (after ordering) + + # Evaluate row ordering quality + AR(CRAB_result$row_prox) + GAR(CRAB_result$row_prox, w = 10) + RGAR(CRAB_result$row_prox, w = 10) + + } ================================================================= ==2530844==ERROR: AddressSanitizer: new-delete-type-mismatch on 0x502000016930 in thread T0: object passed to delete has wrong type: size of the allocated type: 4 bytes; size of the deallocated type: 1 bytes. #0 0x557c9cedc5a6 in operator delete(void*, unsigned long) (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x10d5a6) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683) #1 0x7fdcdd93e6b3 in List::~List() /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/list.cpp:99:5 #2 0x7fdcdd947e47 in external(int*, int**, int) /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:463:3 #3 0x7fdcdd947780 in ordering_external /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:431:3 #4 0x7fdcdd93944d in hctree_sort /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/hctree_R.cpp:1401:7 #5 0x7fdcdd93a4ce in hctree_sort_R(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, int, int) /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/hctree_R.cpp:1470:5 #6 0x7fdcdd9069c5 in _GAPR_hctree_sort_R /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/RcppExports.cpp:23:34 #7 0x7fdcfdf518fc in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:763:11 #8 0x7fdcfdfa2342 in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #9 0x7fdcfe0fa759 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8668:21 #10 0x7fdcfe0a8854 in bcEval /home/hornik/src/R/src/main/eval.c:7501:16 #11 0x7fdcfe0a6f8f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #12 0x7fdcfe0b16e5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #13 0x7fdcfe0ad1dc in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #14 0x7fdcfe0a790f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #15 0x7fdcfe0a790f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #16 0x7fdcfe0c0385 in do_set /home/hornik/src/R/src/main/eval.c:3567:8 #17 0x7fdcfe0a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #18 0x7fdcfe0bc022 in do_begin /home/hornik/src/R/src/main/eval.c:2996:10 #19 0x7fdcfe0a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #20 0x7fdcfe0a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #21 0x7fdcfe1eb417 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #22 0x7fdcfe1ee3a0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #23 0x7fdcfe1ee1b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1234:5 #24 0x7fdcfe1ee49a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1241:5 #25 0x557c9cedddd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #26 0x7fdcfd433ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #27 0x7fdcfd433d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #28 0x557c9cdfa370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683) 0x502000016930 is located 0 bytes inside of 4-byte region [0x502000016930,0x502000016934) allocated by thread T0 here: #0 0x557c9cedb921 in operator new(unsigned long) (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x10c921) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683) #1 0x7fdcdd941510 in getOrderList /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:43:14 #2 0x7fdcdd9478f1 in external(int*, int**, int) /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:440:8 #3 0x7fdcdd947780 in ordering_external /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:431:3 #4 0x7fdcdd93944d in hctree_sort /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/hctree_R.cpp:1401:7 #5 0x7fdcdd93a4ce in hctree_sort_R(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, int, int) /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/hctree_R.cpp:1470:5 #6 0x7fdcdd9069c5 in _GAPR_hctree_sort_R /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/RcppExports.cpp:23:34 #7 0x7fdcfdf518fc in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:763:11 #8 0x7fdcfdfa2342 in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #9 0x7fdcfe0fa759 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8668:21 #10 0x7fdcfe0a8854 in bcEval /home/hornik/src/R/src/main/eval.c:7501:16 #11 0x7fdcfe0a6f8f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #12 0x7fdcfe0b16e5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #13 0x7fdcfe0ad1dc in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #14 0x7fdcfe0a790f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #15 0x7fdcfe0a790f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #16 0x7fdcfe0c0385 in do_set /home/hornik/src/R/src/main/eval.c:3567:8 #17 0x7fdcfe0a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #18 0x7fdcfe0bc022 in do_begin /home/hornik/src/R/src/main/eval.c:2996:10 #19 0x7fdcfe0a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #20 0x7fdcfe0a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #21 0x7fdcfe1eb417 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #22 0x7fdcfe1ee3a0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #23 0x7fdcfe1ee1b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1234:5 #24 0x7fdcfe1ee49a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1241:5 #25 0x557c9cedddd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #26 0x7fdcfd433ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 SUMMARY: AddressSanitizer: new-delete-type-mismatch (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x10d5a6) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683) in operator delete(void*, unsigned long) ==2530844==HINT: if you don't care about these errors you may set ASAN_OPTIONS=new_delete_type_mismatch=0 ==2530844==ABORTING Post-processing issues found: File: GAPR-Ex.Rout ==2530844==ERROR: AddressSanitizer: new-delete-type-mismatch on 0x502000016930 in thread T0: SUMMARY: AddressSanitizer: new-delete-type-mismatch (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x10d5a6) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683) in operator delete(void*, unsigned long) File: 00check.log ==2530844==ERROR: AddressSanitizer: new-delete-type-mismatch on 0x502000016930 in thread T0: SUMMARY: AddressSanitizer: new-delete-type-mismatch (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x10d5a6) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683) in operator delete(void*, unsigned long)