* using log directory ‘/home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck’
* using R Under development (unstable) (2025-06-04 r88278)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘GAPR/DESCRIPTION’ ... OK
* this is package ‘GAPR’ version ‘0.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘GAPR’ can be installed ... [45s/45s] OK
* used C++ compiler: ‘Debian clang version 19.1.7 (3)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [7s/7s] OK
* checking whether the package can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the package can be unloaded cleanly ... [7s/7s] OK
* checking whether the namespace can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the namespace can be unloaded cleanly ... [7s/7s] OK
* checking loading without being on the library search path ... [7s/7s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [44s/44s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [8s/8s] ERROR
Running examples in ‘GAPR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GAP
> ### Title: Generalized Association Plots (GAP)
> ### Aliases: GAP
> 
> ### ** Examples
> 
> # Example using the crabs dataset from the MASS package
> if (requireNamespace("MASS", quietly = TRUE)) {
+   df_crabs <- MASS::crabs
+   CRAB_result <- GAP(
+     data = df_crabs,
+     YdNum = c(1,2),        # First two columns as Y discrete covariates
+     YcNum = 3,             # Third column as Y continuous covariate
+     row.name = c(1,2,3),   # Use First three columns as row names
+     row.prox = "euclidean",
+     col.prox = "euclidean",
+     row.order = "average",
+     col.order = "average",
+     row.flip = "r2e",
+     col.flip = "r2e",
+     border = TRUE,
+     border.width = 1,
+     exp.row_order = TRUE,
+     exp.column_order = TRUE,
+     exp.row_names = TRUE,
+     exp.column_names = TRUE,
+     exp.Yd_codebook = TRUE,
+     exp.Yd = TRUE,
+     exp.Yc = TRUE,
+     exp.originalmatrix = TRUE,
+     exp.row_prox = TRUE,
+     exp.col_prox = TRUE,
+     PNGfilename = file.path(tempdir(), "output_plot.png"),
+     show.plot = TRUE
+   )
+ 
+   # Access exported results:
+   CRAB_result$row_order       # Row order after ordering
+   CRAB_result$column_order    # Column order after ordering
+   CRAB_result$row_names       # Row names after ordering
+   CRAB_result$column_names    # Column names after ordering
+   CRAB_result$Yd_codebook     # Codebook for Y discrete covariates
+   CRAB_result$Yd              # Y discrete covariates after ordering
+   CRAB_result$Yc              # Y continuous covariates after ordering
+   CRAB_result$originalmatrix  # Original matrix (after ordering)
+   CRAB_result$row_prox        # Row proximity matrix (after ordering)
+   CRAB_result$col_prox        # Column proximity matrix (after ordering)
+ 
+   # Evaluate row ordering quality
+   AR(CRAB_result$row_prox)
+   GAR(CRAB_result$row_prox, w = 10)
+   RGAR(CRAB_result$row_prox, w = 10)
+ 
+ }
=================================================================
==2515220==ERROR: AddressSanitizer: new-delete-type-mismatch on 0x502000016930 in thread T0:
  object passed to delete has wrong type:
  size of the allocated type:   4 bytes;
  size of the deallocated type: 1 bytes.
    #0 0x55d020b9d5a6 in operator delete(void*, unsigned long) (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x10d5a6) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683)
    #1 0x7fed79bd66b3 in List::~List() /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/list.cpp:99:5
    #2 0x7fed79bdfe47 in external(int*, int**, int) /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:463:3
    #3 0x7fed79bdf780 in ordering_external /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:431:3
    #4 0x7fed79bd144d in hctree_sort /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/hctree_R.cpp:1401:7
    #5 0x7fed79bd24ce in hctree_sort_R(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, int, int) /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/hctree_R.cpp:1470:5
    #6 0x7fed79b9e9c5 in _GAPR_hctree_sort_R /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/RcppExports.cpp:23:34
    #7 0x7fed9a3518fc in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:763:11
    #8 0x7fed9a3a2342 in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11
    #9 0x7fed9a4fa759 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8668:21
    #10 0x7fed9a4a8854 in bcEval /home/hornik/src/R/src/main/eval.c:7501:16
    #11 0x7fed9a4a6f8f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8
    #12 0x7fed9a4b16e5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22
    #13 0x7fed9a4ad1dc in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16
    #14 0x7fed9a4a790f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16
    #15 0x7fed9a4a790f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12
    #16 0x7fed9a4c0385 in do_set /home/hornik/src/R/src/main/eval.c:3567:8
    #17 0x7fed9a4a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12
    #18 0x7fed9a4bc022 in do_begin /home/hornik/src/R/src/main/eval.c:2996:10
    #19 0x7fed9a4a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12
    #20 0x7fed9a4a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12
    #21 0x7fed9a5eb417 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2
    #22 0x7fed9a5ee3a0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11
    #23 0x7fed9a5ee1b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1234:5
    #24 0x7fed9a5ee49a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1241:5
    #25 0x55d020b9edd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5
    #26 0x7fed99743ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16
    #27 0x7fed99743d64 in __libc_start_main csu/../csu/libc-start.c:360:3
    #28 0x55d020abb370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683)

0x502000016930 is located 0 bytes inside of 4-byte region [0x502000016930,0x502000016934)
allocated by thread T0 here:
    #0 0x55d020b9c921 in operator new(unsigned long) (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x10c921) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683)
    #1 0x7fed79bd9510 in getOrderList /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:43:14
    #2 0x7fed79bdf8f1 in external(int*, int**, int) /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:440:8
    #3 0x7fed79bdf780 in ordering_external /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/ordering.cpp:431:3
    #4 0x7fed79bd144d in hctree_sort /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/hctree_R.cpp:1401:7
    #5 0x7fed79bd24ce in hctree_sort_R(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, int, int) /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/hctree_R.cpp:1470:5
    #6 0x7fed79b9e9c5 in _GAPR_hctree_sort_R /home/hornik/tmp/CRAN_special_clang-san/GAPR.Rcheck/00_pkg_src/GAPR/src/RcppExports.cpp:23:34
    #7 0x7fed9a3518fc in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:763:11
    #8 0x7fed9a3a2342 in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11
    #9 0x7fed9a4fa759 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8668:21
    #10 0x7fed9a4a8854 in bcEval /home/hornik/src/R/src/main/eval.c:7501:16
    #11 0x7fed9a4a6f8f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8
    #12 0x7fed9a4b16e5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22
    #13 0x7fed9a4ad1dc in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16
    #14 0x7fed9a4a790f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16
    #15 0x7fed9a4a790f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12
    #16 0x7fed9a4c0385 in do_set /home/hornik/src/R/src/main/eval.c:3567:8
    #17 0x7fed9a4a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12
    #18 0x7fed9a4bc022 in do_begin /home/hornik/src/R/src/main/eval.c:2996:10
    #19 0x7fed9a4a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12
    #20 0x7fed9a4a735b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12
    #21 0x7fed9a5eb417 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2
    #22 0x7fed9a5ee3a0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11
    #23 0x7fed9a5ee1b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1234:5
    #24 0x7fed9a5ee49a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1241:5
    #25 0x55d020b9edd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5
    #26 0x7fed99743ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16

SUMMARY: AddressSanitizer: new-delete-type-mismatch (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x10d5a6) (BuildId: cb572fc433d0ad213d4bcc3b6ed58fac2d1ab683) in operator delete(void*, unsigned long)
==2515220==HINT: if you don't care about these errors you may set ASAN_OPTIONS=new_delete_type_mismatch=0
==2515220==ABORTING
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR