* installing *source* package ‘GAPR’ ...
** this is package ‘GAPR’ version ‘0.1.0’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c hctree_R.cpp -o hctree_R.o
In file included from hctree_R.cpp:7:
./ordering.h:9:15: warning: unused function 'select_average_list' [-Wunused-function]
    9 | static double select_average_list(double **data,List *rlist,List *clist);
      |               ^~~~~~~~~~~~~~~~~~~
./ordering.h:10:15: warning: unused function 'select_average' [-Wunused-function]
   10 | static double select_average(double **data,List *list);
      |               ^~~~~~~~~~~~~~
2 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c list.cpp -o list.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c ordering.cpp -o ordering.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c proximity_R.cpp -o proximity_R.o
proximity_R.cpp:177:16: warning: unused variable 'sum' [-Wunused-variable]
  177 |         double sum;
      |                ^~~
proximity_R.cpp:260:16: warning: unused variable 'sum' [-Wunused-variable]
  260 |         double sum;
      |                ^~~
proximity_R.cpp:676:16: warning: unused variable 'sum' [-Wunused-variable]
  676 |         double sum;
      |                ^~~
proximity_R.cpp:752:16: warning: unused variable 'sum' [-Wunused-variable]
  752 |         double sum;
      |                ^~~
proximity_R.cpp:938:13: warning: variable 'new_count' set but not used [-Wunused-but-set-variable]
  938 |         int new_count = 0;
      |             ^
proximity_R.cpp:941:16: warning: unused variable 'sum' [-Wunused-variable]
  941 |         double sum;
      |                ^~~
proximity_R.cpp:1002:13: warning: variable 'new_count' set but not used [-Wunused-but-set-variable]
 1002 |         int new_count;
      |             ^
proximity_R.cpp:1003:16: warning: unused variable 'sum' [-Wunused-variable]
 1003 |         double sum;
      |                ^~~
proximity_R.cpp:1070:16: warning: unused variable 'sum' [-Wunused-variable]
 1070 |         double sum;
      |                ^~~
proximity_R.cpp:1134:16: warning: unused variable 'sum' [-Wunused-variable]
 1134 |         double sum;
      |                ^~~
proximity_R.cpp:1141:16: warning: variable 'var_i' set but not used [-Wunused-but-set-variable]
 1141 |         double var_i, var_j, mycov;
      |                ^
proximity_R.cpp:1141:23: warning: variable 'var_j' set but not used [-Wunused-but-set-variable]
 1141 |         double var_i, var_j, mycov;
      |                       ^
12 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c r2e_R.cpp -o r2e_R.o
r2e_R.cpp:179:12: warning: unused variable 'zoomratio' [-Wunused-variable]
  179 |     double zoomratio;
      |            ^~~~~~~~~
r2e_R.cpp:302:9: warning: variable 'tempmaxi' set but not used [-Wunused-but-set-variable]
  302 |     int tempmaxi;
      |         ^
2 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GAPR.so RcppExports.o hctree_R.o list.o ordering.o proximity_R.o r2e_R.o -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/GAPR.Rcheck/00LOCK-GAPR/00new/GAPR/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GAPR)