* using log directory ‘/srv/hornik/tmp/CRAN_pretest/GALLO.Rcheck’
* using R Under development (unstable) (2026-02-04 r89376)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (1+b1)
    Debian flang version 21.1.8 (1+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-02-05 12:57:06 UTC
* checking for file ‘GALLO/DESCRIPTION’ ... OK
* this is package ‘GALLO’ version ‘2.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Pablo Fonseca <p.fonseca@csic.es>’

New maintainer:
  Pablo Fonseca <p.fonseca@csic.es>
Old maintainer(s):
  Pablo Fonseca <pfonseca@uoguelph.ca>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GALLO’ can be installed ... [7s/7s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [12s/12s] OK
* checking PDF version of manual ... [5s/5s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! LaTeX Error: Unicode character ∼ (U+223C)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character α (U+03B1)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! Missing { inserted.
<to be read again> 
                   $
l.208 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing } inserted.
<inserted text> 
                }
l.208 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! LaTeX Error: Unicode character ∣ (U+2223)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ∣ (U+2223)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! Missing { inserted.
<to be read again> 
                   $
l.509 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing } inserted.
<inserted text> 
                }
l.509 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing { inserted.
<to be read again> 
                   $
l.545 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing } inserted.
<inserted text> 
                }
l.545 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing { inserted.
<to be read again> 
                   $
l.581 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing } inserted.
<inserted text> 
                }
l.581 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing { inserted.
<to be read again> 
                   $
l.617 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing } inserted.
<inserted text> 
                }
l.617 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing { inserted.
<to be read again> 
                   $
l.657 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
! Missing } inserted.
<inserted text> 
                }
l.657 ...eled as p\eqn{\sim}{}Beta(\eqn{\alpha_}{}
                                                  ,1) when Z=1; values <1 co...
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... [1s/1s] NOTE
Found the following math rendering problems:
Gene_PPA.Rd:35: Expected group after '_' in \alpha_
model.LR.Rd:26: Expected group after '_' in \alpha_
model.M.Rd:16: Expected group after '_' in \alpha_
model.MVN.Rd:16: Expected group after '_' in \alpha_
model.NB.Rd:16: Expected group after '_' in \alpha_
model.proj.Rd:20: Expected group after '_' in \alpha_
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘GALLO-manual.tex’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 3 NOTEs