* using log directory 'd:/RCompile/CRANincoming/R-devel/GAGBLUP.Rcheck'
* using R Under development (unstable) (2023-09-03 r85052 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'GAGBLUP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GAGBLUP' version '1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Yuxiang Zhang <yuxiangzhang_99@foxmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  Genomic (3:35)
  Scrucca (13:42)
  genomic (14:23, 14:66, 15:74)

Found the following (possibly) invalid DOIs:
  DOI: doi.org/10.18637/jss.v053.i04
    From: DESCRIPTION
    Status: 404
    Message: Not Found

The Description field contains
  <doi:doi.org/10.18637/jss.v053.i04>) assisted genomic best liner
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GAGBLUP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [32s] ERROR
Running examples in 'GAGBLUP-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gagblup
> ### Title: Genetic algorithm assisted genomic best liner unbiased
> ###   prediction for genomic selection
> ### Aliases: gagblup
> 
> ### ** Examples
> 
> ## load example data from GAGBLUP package
> data(phenotype)
> data(genotype)
> phenotype <- phenotype[,3]
> bins <- bin(genotype,0.2)$bins_genotypes
> result <- gagblup(bins,phenotype,fit_fun='HAT',maxiter=5,nfold=3,nTimes=1,seed=123,n_core=1)
Predicting by GAGBLUP...
Error in e$fun(obj, substitute(ex), parent.frame(), e$data) : 
  worker initialization failed: there is no package called 'MASS'
Calls: gagblup -> %dopar% -> <Anonymous>
Execution halted
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE