R Under development (unstable) (2025-04-13 r88141 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> options(dbms = "sqlite")
> runTestsOnEunomia <- TRUE
> if (runTestsOnEunomia) {
+   test_check("FeatureExtraction")
+ }
Loading required package: FeatureExtraction
Loading required package: DatabaseConnector
OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used.
Loading required package: Andromeda
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

************* Testing on sqlite *************

attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB

attempting to extract and load: D:\temp\2025_04_15_08_55_17_18796\RtmpauhJ9a/GiBleed_5.3.zip to: D:\temp\2025_04_15_08_55_17_18796\RtmpauhJ9a/GiBleed_5.3.sqlite
Connecting using SQLite driver
Executing SQL took 0.0325 secs
Cohorts created in table main.cohort
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.441 secs
Constructing features on server
Fetching data from server
Fetching data took 0.219 secs
# CovariateData object

Cohorts of interest IDs: 1, 2

Inherits from Andromeda:
# Andromeda object
# Physical location:  D:\temp\2025_04_15_08_55_17_18796\RtmpauhJ9a\file22ec6c921761.sqlite

Tables:
$analysisRef (analysisId, analysisName, domainId, startDay, endDay, isBinary, missingMeansZero)
$covariateRef (covariateId, covariateName, analysisId, conceptId)
$covariates (cohortDefinitionId, covariateId, covariateValue, rowId)
Constructing features on server
Fetching data from server
Fetching data took 0.181 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.186 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.195 secs
Constructing features on server
Fetching data from server
Fetching data took 0.188 secs
Constructing features on server
Fetching data from server
Fetching data took 0.172 secs
Constructing features on server
Fetching data from server
Fetching data took 0.147 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.184 secs
Constructing features on server
Fetching data from server
Fetching data took 0.173 secs
Aggregating covariates took 0.863 secs
Constructing features on server
Fetching data from server
Fetching data took 0.185 secs
Constructing features on server
Fetching data from server
Fetching data took 0.156 secs
Constructing features on server
Fetching data from server
Fetching data took 0.162 secs
Constructing features on server
Fetching data from server
Fetching data took 0.184 secs
Constructing features on server
Fetching data from server
Fetching data took 0.151 secs
Constructing features on server
Fetching data from server
Fetching data took 0.193 secs
Constructing features on server
Fetching data from server
Fetching data took 0.238 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.251 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.27 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.145 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.229 secs
Tidying covariates took 0.239 secs
Removing 1 redundant covariates
Removing 1 infrequent covariates
Normalizing covariates
Tidying covariates took 1.34 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.232 secs
Removing 0 redundant covariate ID - time ID combinations
Removing 0 infrequent covariates
Normalizing covariates
Tidying covariates took 1.57 secs
[ FAIL 0 | WARN 5 | SKIP 82 | PASS 128 ]

══ Skipped tests (82) ══════════════════════════════════════════════════════════
• On CRAN (26): 'test-Aggregation.R:6:3', 'test-CompareCohorts.R:54:3',
  'test-CovariateData.R:55:3', 'test-CovariateData.R:99:3',
  'test-CovariateData.R:160:3', 'test-CovariateData.R:174:3',
  'test-GetCohortBasedCovariates.R:489:3',
  'test-GetCohortBasedCovariates.R:500:3',
  'test-GetCohortBasedCovariates.R:511:3',
  'test-GetCohortBasedCovariates.R:522:3',
  'test-GetCohortBasedCovariates.R:533:3',
  'test-GetCohortBasedCovariates.R:544:3',
  'test-GetCohortBasedCovariates.R:555:3',
  'test-GetCohortBasedCovariates.R:566:3', 'test-GetCovariates.R:63:3',
  'test-GetCovariates.R:87:3', 'test-GetCovariates.R:100:3',
  'test-GetCovariates.R:113:3',
  'test-GetCovariatesFromCohortAttributes.R:30:3',
  'test-GetCovariatesFromCohortAttributes.R:51:3',
  'test-GetCovariatesFromCohortAttributes.R:79:3',
  'test-GetCovariatesTemporalSequence.R:83:3',
  'test-GetDefaultCovariates.R:6:3', 'test-HelperFunctions.R:36:3',
  'test-Table1.R:85:3', 'test-Table1.R:146:3'
• dbms == "oracle" is not TRUE (14): 'test-GetCohortBasedCovariates.R:796:3',
  'test-GetCohortBasedCovariates.R:808:3',
  'test-GetCohortBasedCovariates.R:820:3',
  'test-GetCohortBasedCovariates.R:832:3',
  'test-GetCohortBasedCovariates.R:844:3',
  'test-GetCohortBasedCovariates.R:856:3',
  'test-GetCohortBasedCovariates.R:868:3',
  'test-GetCohortBasedCovariates.R:880:3',
  'test-GetCohortBasedCovariates.R:892:3', 'test-query-no-fail.R:162:3',
  'test-query-no-fail.R:344:3', 'test-query-no-fail.R:450:3',
  'test-query-no-fail.R:558:3', 'test-spot-checks.R:204:3'
• dbms == "postgresql" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:578:3',
  'test-GetCohortBasedCovariates.R:590:3',
  'test-GetCohortBasedCovariates.R:602:3',
  'test-GetCohortBasedCovariates.R:614:3',
  'test-GetCohortBasedCovariates.R:626:3',
  'test-GetCohortBasedCovariates.R:638:3',
  'test-GetCohortBasedCovariates.R:650:3',
  'test-GetCohortBasedCovariates.R:662:3',
  'test-GetCohortBasedCovariates.R:674:3', 'test-query-no-fail.R:146:3',
  'test-query-no-fail.R:328:3', 'test-query-no-fail.R:434:3',
  'test-query-no-fail.R:542:3', 'test-spot-checks.R:190:3'
• dbms == "redshift" is not TRUE (14): 'test-GetCohortBasedCovariates.R:905:3',
  'test-GetCohortBasedCovariates.R:917:3',
  'test-GetCohortBasedCovariates.R:929:3',
  'test-GetCohortBasedCovariates.R:941:3',
  'test-GetCohortBasedCovariates.R:953:3',
  'test-GetCohortBasedCovariates.R:965:3',
  'test-GetCohortBasedCovariates.R:977:3',
  'test-GetCohortBasedCovariates.R:989:3',
  'test-GetCohortBasedCovariates.R:1001:3', 'test-query-no-fail.R:170:3',
  'test-query-no-fail.R:352:3', 'test-query-no-fail.R:458:3',
  'test-query-no-fail.R:566:3', 'test-spot-checks.R:211:3'
• dbms == "sql server" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:687:3',
  'test-GetCohortBasedCovariates.R:699:3',
  'test-GetCohortBasedCovariates.R:711:3',
  'test-GetCohortBasedCovariates.R:723:3',
  'test-GetCohortBasedCovariates.R:735:3',
  'test-GetCohortBasedCovariates.R:747:3',
  'test-GetCohortBasedCovariates.R:759:3',
  'test-GetCohortBasedCovariates.R:771:3',
  'test-GetCohortBasedCovariates.R:783:3', 'test-query-no-fail.R:154:3',
  'test-query-no-fail.R:336:3', 'test-query-no-fail.R:442:3',
  'test-query-no-fail.R:550:3', 'test-spot-checks.R:197:3'

[ FAIL 0 | WARN 5 | SKIP 82 | PASS 128 ]
Executing SQL took 0.00789 secs
> 
> proc.time()
   user  system elapsed 
 373.68    6.90  369.56