R Under development (unstable) (2024-10-17 r87242 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> options(dbms = "sqlite")
> runTestsOnEunomia <- TRUE
> if (runTestsOnEunomia) {
+   test_check("FeatureExtraction")
+ }
Loading required package: FeatureExtraction
Loading required package: DatabaseConnector
Loading required package: Andromeda
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

************* Testing on sqlite *************

attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB

attempting to extract and load: D:\temp\RtmpqYC9oz/GiBleed_5.3.zip to: D:\temp\RtmpqYC9oz/GiBleed_5.3.sqlite
Connecting using SQLite driver
Executing SQL took 0.0324 secs
Cohorts created in table main.cohort
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.394 secs
Constructing features on server
Fetching data from server
Fetching data took 0.247 secs
# CovariateData object

Cohorts of interest IDs: 1, 2

Inherits from Andromeda:
# Andromeda object
# Physical location:  D:\temp\RtmpqYC9oz\filef074446a4547.sqlite

Tables:
$analysisRef (analysisId, analysisName, domainId, startDay, endDay, isBinary, missingMeansZero)
$covariateRef (covariateId, covariateName, analysisId, conceptId)
$covariates (cohortDefinitionId, covariateId, covariateValue, rowId)
Constructing features on server
Fetching data from server
Fetching data took 0.204 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.168 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.197 secs
Constructing features on server
Fetching data from server
Fetching data took 0.19 secs
Constructing features on server
Fetching data from server
Fetching data took 0.198 secs
Constructing features on server
Fetching data from server
Fetching data took 0.195 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.268 secs
Constructing features on server
Fetching data from server
Fetching data took 0.164 secs
Aggregating covariates took 0.786 secs
Constructing features on server
Fetching data from server
Fetching data took 0.172 secs
Constructing features on server
Fetching data from server
Fetching data took 0.173 secs
Constructing features on server
Fetching data from server
Fetching data took 0.161 secs
Constructing features on server
Fetching data from server
Fetching data took 0.18 secs
Constructing features on server
Fetching data from server
Fetching data took 0.216 secs
Constructing features on server
Fetching data from server
Fetching data took 0.235 secs
Constructing features on server
Fetching data from server
Fetching data took 0.244 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.306 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.297 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.199 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.183 secs
Tidying covariates took 0.257 secs
Removing 1 redundant covariates
Removing 1 infrequent covariates
Normalizing covariates
Tidying covariates took 1.33 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.222 secs
Removing 0 redundant covariate ID - time ID combinations
Removing 0 infrequent covariates
Normalizing covariates
Tidying covariates took 1.76 secs
[ FAIL 0 | WARN 5 | SKIP 82 | PASS 128 ]

══ Skipped tests (82) ══════════════════════════════════════════════════════════
• On CRAN (26): 'test-Aggregation.R:6:3', 'test-CompareCohorts.R:42:3',
  'test-CovariateData.R:55:3', 'test-CovariateData.R:99:3',
  'test-CovariateData.R:160:3', 'test-CovariateData.R:174:3',
  'test-GetCohortBasedCovariates.R:489:3',
  'test-GetCohortBasedCovariates.R:500:3',
  'test-GetCohortBasedCovariates.R:511:3',
  'test-GetCohortBasedCovariates.R:522:3',
  'test-GetCohortBasedCovariates.R:533:3',
  'test-GetCohortBasedCovariates.R:544:3',
  'test-GetCohortBasedCovariates.R:555:3',
  'test-GetCohortBasedCovariates.R:566:3', 'test-GetCovariates.R:63:3',
  'test-GetCovariates.R:87:3', 'test-GetCovariates.R:100:3',
  'test-GetCovariates.R:113:3',
  'test-GetCovariatesFromCohortAttributes.R:30:3',
  'test-GetCovariatesFromCohortAttributes.R:51:3',
  'test-GetCovariatesFromCohortAttributes.R:79:3',
  'test-GetCovariatesTemporalSequence.R:83:3',
  'test-GetDefaultCovariates.R:6:3', 'test-HelperFunctions.R:31:3',
  'test-Table1.R:85:3', 'test-Table1.R:146:3'
• dbms == "oracle" is not TRUE (14): 'test-GetCohortBasedCovariates.R:796:3',
  'test-GetCohortBasedCovariates.R:808:3',
  'test-GetCohortBasedCovariates.R:820:3',
  'test-GetCohortBasedCovariates.R:832:3',
  'test-GetCohortBasedCovariates.R:844:3',
  'test-GetCohortBasedCovariates.R:856:3',
  'test-GetCohortBasedCovariates.R:868:3',
  'test-GetCohortBasedCovariates.R:880:3',
  'test-GetCohortBasedCovariates.R:892:3', 'test-query-no-fail.R:162:3',
  'test-query-no-fail.R:344:3', 'test-query-no-fail.R:450:3',
  'test-query-no-fail.R:558:3', 'test-spot-checks.R:204:3'
• dbms == "postgresql" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:578:3',
  'test-GetCohortBasedCovariates.R:590:3',
  'test-GetCohortBasedCovariates.R:602:3',
  'test-GetCohortBasedCovariates.R:614:3',
  'test-GetCohortBasedCovariates.R:626:3',
  'test-GetCohortBasedCovariates.R:638:3',
  'test-GetCohortBasedCovariates.R:650:3',
  'test-GetCohortBasedCovariates.R:662:3',
  'test-GetCohortBasedCovariates.R:674:3', 'test-query-no-fail.R:146:3',
  'test-query-no-fail.R:328:3', 'test-query-no-fail.R:434:3',
  'test-query-no-fail.R:542:3', 'test-spot-checks.R:190:3'
• dbms == "redshift" is not TRUE (14): 'test-GetCohortBasedCovariates.R:905:3',
  'test-GetCohortBasedCovariates.R:917:3',
  'test-GetCohortBasedCovariates.R:929:3',
  'test-GetCohortBasedCovariates.R:941:3',
  'test-GetCohortBasedCovariates.R:953:3',
  'test-GetCohortBasedCovariates.R:965:3',
  'test-GetCohortBasedCovariates.R:977:3',
  'test-GetCohortBasedCovariates.R:989:3',
  'test-GetCohortBasedCovariates.R:1001:3', 'test-query-no-fail.R:170:3',
  'test-query-no-fail.R:352:3', 'test-query-no-fail.R:458:3',
  'test-query-no-fail.R:566:3', 'test-spot-checks.R:211:3'
• dbms == "sql server" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:687:3',
  'test-GetCohortBasedCovariates.R:699:3',
  'test-GetCohortBasedCovariates.R:711:3',
  'test-GetCohortBasedCovariates.R:723:3',
  'test-GetCohortBasedCovariates.R:735:3',
  'test-GetCohortBasedCovariates.R:747:3',
  'test-GetCohortBasedCovariates.R:759:3',
  'test-GetCohortBasedCovariates.R:771:3',
  'test-GetCohortBasedCovariates.R:783:3', 'test-query-no-fail.R:154:3',
  'test-query-no-fail.R:336:3', 'test-query-no-fail.R:442:3',
  'test-query-no-fail.R:550:3', 'test-spot-checks.R:197:3'

[ FAIL 0 | WARN 5 | SKIP 82 | PASS 128 ]
Executing SQL took 0.0068 secs
> 
> proc.time()
   user  system elapsed 
 363.82    6.71  359.59