# This file covers the code in GetDefaultCovariates.R. View coverage for this file using # library(testthat); library(FeatureExtraction) # covr::file_report(covr::file_coverage("R/GetDefaultCovariates.R", "tests/testthat/test-GetDefaultCovariates.R")) test_that("Test exit conditions", { skip_if_not(dbms == "sqlite" && exists("eunomiaConnection")) # covariateSettings object type expect_error(getDbDefaultCovariateData( connection = eunomiaConnection, cdmDatabaseSchema = "main", covariateSettings = list(), targetDatabaseSchema = "main", targetCovariateTable = "cov", targetCovariateRefTable = "cov_ref", targetAnalysisRefTable = "cov_analysis_ref" )) # CDM 4 not supported expect_error(getDbDefaultCovariateData( connection = eunomiaConnection, cdmDatabaseSchema = "main", cdmVersion = "4", covariateSettings = createDefaultCovariateSettings(), targetDatabaseSchema = "main", targetCovariateTable = "cov", targetCovariateRefTable = "cov_ref", targetAnalysisRefTable = "cov_analysis_ref" )) # targetCovariateTable and aggregated not supported expect_error(getDbDefaultCovariateData( connection = eunomiaConnection, cdmDatabaseSchema = "main", cohortId = -1, covariateSettings = createDefaultCovariateSettings(), targetDatabaseSchema = "main", targetCovariateTable = "cov", targetCovariateRefTable = "cov_ref", targetAnalysisRefTable = "cov_analysis_ref", aggregated = TRUE )) }) # AGS - This test fails and is likely due to a bug when using SqlLite # test_that("Test target table", { # connection <- DatabaseConnector::connect(connectionDetails) # Eunomia::createCohorts(connectionDetails) # # results <- getDbDefaultCovariateData(connection = connection, # cdmDatabaseSchema = "main", # cohortTable = "cohort", # covariateSettings = createDefaultCovariateSettings(), # targetDatabaseSchema = "main", # targetCovariateTable = "ut_cov", # targetCovariateRefTable = "ut_cov_ref", # targetAnalysisRefTable = "ut_cov_analysis_ref") # # on.exit(DatabaseConnector::disconnect(connection)) # }) # # unlink(connectionDetails$server())