* using log directory 'd:/RCompile/CRANincoming/R-devel/FeatureExtraction.Rcheck' * using R Under development (unstable) (2024-04-29 r86495 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'FeatureExtraction/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'FeatureExtraction' version '3.5.2' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Ger Inberg ' New submission Found the following (possibly) invalid URLs: URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/extras/FeatureExtraction.pdf From: README.md Status: Error Message: Recv failure: Connection was reset URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf From: README.md Status: Error Message: Recv failure: Connection was reset URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/CreatingCovariatesUsingCohortAttributes.pdf From: README.md Status: Error Message: Recv failure: Connection was reset URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/CreatingCustomCovariateBuilders.pdf From: README.md Status: Error Message: Recv failure: Connection was reset URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/CreatingCustomCovariateBuildersKorean.pdf From: README.md Status: Error Message: Recv failure: Connection was reset URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/UsingFeatureExtraction.pdf From: README.md Status: Error Message: Recv failure: Connection was reset URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/UsingFeatureExtractionKorean.pdf From: README.md Status: Error Message: Recv failure: Connection was reset * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'FeatureExtraction' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... WARNING '::' or ':::' imports not declared from: 'curl' 'httr' * checking tests ... ERROR Running 'testOracle.R' Running 'testPostgres.R' Running 'testRedshift.R' Running 'testSqlServer.R' Running 'testSqlite.R' Running the tests in 'tests/testSqlite.R' failed. Complete output: > library(testthat) > options(dbms = "sqlite") > runTestsOnEunomia <- TRUE > if (runTestsOnEunomia) { + test_check("FeatureExtraction") + } Loading required package: FeatureExtraction Loading required package: DatabaseConnector Loading required package: Andromeda Loading required package: dplyr Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union ************* Testing on sqlite ************* Error in `FUN()`: ! In path: "D:\\RCompile\\CRANincoming\\R-devel\\FeatureExtraction.Rcheck\\tests\\testthat\\setup.R" Caused by error in `loadNamespace()`: ! there is no package called 'curl' Backtrace: ▆ 1. ├─testthat::test_check("FeatureExtraction") 2. │ └─testthat::test_dir(...) 3. │ └─testthat:::test_files(...) 4. │ └─testthat:::test_files_serial(...) 5. │ └─testthat:::test_files_setup_state(...) 6. │ └─testthat::source_test_setup(".", env) 7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE) 8. │ └─base::lapply(...) 9. │ └─testthat (local) FUN(X[[i]], ...) 10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap) 11. │ ├─base::withCallingHandlers(...) 12. │ └─base::eval(exprs, env) 13. │ └─base::eval(exprs, env) 14. │ └─FeatureExtraction:::checkRemoteFileAvailable("https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip") at D:\RCompile\CRANincoming\R-devel\FeatureExtraction.Rcheck\tests\testthat\setup.R:164:3 15. ├─base::loadNamespace(x) at D:\RCompile\CRANincoming\R-devel\FeatureExtraction.Rcheck\tests\testthat\setup.R:89:3 16. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 17. │ │ └─base (local) withOneRestart(expr, restarts[[1L]]) 18. │ │ └─base (local) doWithOneRestart(return(expr), restart) 19. │ └─base::stop(cond) 20. └─testthat (local) ``(``) 21. └─rlang::abort(...) Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [93s] OK * checking PDF version of manual ... [29s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING, 1 NOTE