* using log directory 'd:/RCompile/CRANincoming/R-devel/FeatureExtraction.Rcheck'
* using R Under development (unstable) (2024-04-29 r86495 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'FeatureExtraction/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FeatureExtraction' version '3.5.2'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Ger Inberg <g.inberg@erasmusmc.nl>'

New submission

Found the following (possibly) invalid URLs:
  URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/extras/FeatureExtraction.pdf
    From: README.md
    Status: Error
    Message: Recv failure: Connection was reset
  URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf
    From: README.md
    Status: Error
    Message: Recv failure: Connection was reset
  URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/CreatingCovariatesUsingCohortAttributes.pdf
    From: README.md
    Status: Error
    Message: Recv failure: Connection was reset
  URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/CreatingCustomCovariateBuilders.pdf
    From: README.md
    Status: Error
    Message: Recv failure: Connection was reset
  URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/CreatingCustomCovariateBuildersKorean.pdf
    From: README.md
    Status: Error
    Message: Recv failure: Connection was reset
  URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/UsingFeatureExtraction.pdf
    From: README.md
    Status: Error
    Message: Recv failure: Connection was reset
  URL: https://raw.githubusercontent.com/OHDSI/FeatureExtraction/main/inst/doc/UsingFeatureExtractionKorean.pdf
    From: README.md
    Status: Error
    Message: Recv failure: Connection was reset
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FeatureExtraction' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... ERROR
  Running 'testOracle.R'
  Running 'testPostgres.R'
  Running 'testRedshift.R'
  Running 'testSqlServer.R'
  Running 'testSqlite.R'
Running the tests in 'tests/testSqlite.R' failed.
Complete output:
  > library(testthat)
  > options(dbms = "sqlite")
  > runTestsOnEunomia <- TRUE
  > if (runTestsOnEunomia) {
  +   test_check("FeatureExtraction")
  + }
  Loading required package: FeatureExtraction
  Loading required package: DatabaseConnector
  Loading required package: Andromeda
  Loading required package: dplyr
  
  Attaching package: 'dplyr'
  
  The following object is masked from 'package:testthat':
  
      matches
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  ************* Testing on sqlite *************
  
  attempting to download GiBleed
  trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
  Error in `FUN()`:
  ! In path: "D:\\RCompile\\CRANincoming\\R-devel\\FeatureExtraction.Rcheck\\tests\\testthat\\setup.R"
  Caused by error in `utils::download.file()`:
  ! cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
  Backtrace:
       ▆
    1. ├─testthat::test_check("FeatureExtraction")
    2. │ └─testthat::test_dir(...)
    3. │   └─testthat:::test_files(...)
    4. │     └─testthat:::test_files_serial(...)
    5. │       └─testthat:::test_files_setup_state(...)
    6. │         └─testthat::source_test_setup(".", env)
    7. │           └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
    8. │             └─base::lapply(...)
    9. │               └─testthat (local) FUN(X[[i]], ...)
   10. │                 └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
   11. │                   ├─base::withCallingHandlers(...)
   12. │                   └─base::eval(exprs, env)
   13. │                     └─base::eval(exprs, env)
   14. │                       └─Eunomia::getEunomiaConnectionDetails(databaseFile = "testEunomia.sqlite") at D:\RCompile\CRANincoming\R-devel\FeatureExtraction.Rcheck\tests\testthat\setup.R:133:3
   15. │                         └─Eunomia::getDatabaseFile(...)
   16. │                           └─Eunomia::downloadEunomiaData(...)
   17. │                             └─utils::download.file(...)
   18. └─base::.handleSimpleError(...)
   19.   └─testthat (local) h(simpleError(msg, call))
   20.     └─rlang::abort(...)
  Warning message:
  In utils::download.file(url = paste(baseUrl, datasetName, zipName,  :
    URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip': status was 'SSL connect error'
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [94s] OK
* checking PDF version of manual ... [29s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE