R Under development (unstable) (2026-03-05 r89546 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> options(dbms = "sqlite")
> runTestsOnEunomia <- TRUE
> if (runTestsOnEunomia) {
+   test_check("FeatureExtraction")
+ }
Loading required package: FeatureExtraction
Loading required package: DatabaseConnector
Loading required package: Andromeda
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

************* Testing on sqlite *************

Timeout was reached [raw.githubusercontent.com]:
Operation timed out after 1000 milliseconds with 6574254 out of 6861852 bytes received
# CovariateData object

Cohorts of interest IDs: 1, 2

Inherits from Andromeda:
# Andromeda object
# Physical location:  D:\temp\2026_03_06_10_50_17_149\RtmpWgI0UV\fileb44c309e4918.duckdb

Tables:
$analysisRef (analysisId, analysisName, domainId, startDay, endDay, isBinary, missingMeansZero)
$covariateRef (covariateId, covariateName, analysisId, conceptId)
$covariates (cohortDefinitionId, covariateId, covariateValue, rowId)
Tidying covariates took 1.09 secs
Removing 1 redundant covariates
Removing 1 infrequent covariates
Normalizing covariates
Tidying covariates took 2.61 secs
Removing 1 redundant covariates
Tidying covariates took 2.04 secs
Removing 1 redundant covariates
Tidying covariates took 2.07 secs
Removing 1 redundant covariates
Tidying covariates took 2.02 secs
Removing 1 redundant covariates
Tidying covariates took 2.1 secs
Removing 1 redundant covariates
Tidying covariates took 2.15 secs
Removing 1 redundant covariates
Tidying covariates took 2.01 secs
Removing 1 redundant covariates
Tidying covariates took 2.01 secs
Removing 1 redundant covariates
Tidying covariates took 2.04 secs
Removing 1 redundant covariates
Tidying covariates took 2.02 secs
Removing 1 redundant covariates
Tidying covariates took 2.03 secs
[ FAIL 0 | WARN 3 | SKIP 104 | PASS 66 ]

══ Skipped tests (104) ═════════════════════════════════════════════════════════
• On CRAN (27): 'test-Aggregation.R:6:3', 'test-CompareCohorts.R:41:3',
  'test-CovariateData.R:55:3', 'test-CovariateData.R:99:3',
  'test-CovariateData.R:160:3', 'test-CovariateData.R:174:3',
  'test-CovariateData.R:193:3', 'test-GetCohortBasedCovariates.R:515:3',
  'test-GetCohortBasedCovariates.R:526:3',
  'test-GetCohortBasedCovariates.R:537:3',
  'test-GetCohortBasedCovariates.R:548:3',
  'test-GetCohortBasedCovariates.R:559:3',
  'test-GetCohortBasedCovariates.R:570:3',
  'test-GetCohortBasedCovariates.R:581:3',
  'test-GetCohortBasedCovariates.R:592:3', 'test-GetCovariates.R:63:3',
  'test-GetCovariates.R:87:3', 'test-GetCovariates.R:100:3',
  'test-GetCovariates.R:113:3',
  'test-GetCovariatesFromCohortAttributes.R:30:3',
  'test-GetCovariatesFromCohortAttributes.R:51:3',
  'test-GetCovariatesFromCohortAttributes.R:79:3',
  'test-GetCovariatesTemporalSequence.R:83:3',
  'test-GetDefaultCovariates.R:6:3', 'test-HelperFunctions.R:31:3',
  'test-Table1.R:84:3', 'test-Table1.R:145:3'
• dbms == "oracle" is not TRUE (14): 'test-GetCohortBasedCovariates.R:822:3',
  'test-GetCohortBasedCovariates.R:834:3',
  'test-GetCohortBasedCovariates.R:846:3',
  'test-GetCohortBasedCovariates.R:858:3',
  'test-GetCohortBasedCovariates.R:870:3',
  'test-GetCohortBasedCovariates.R:882:3',
  'test-GetCohortBasedCovariates.R:894:3',
  'test-GetCohortBasedCovariates.R:906:3',
  'test-GetCohortBasedCovariates.R:918:3', 'test-query-no-fail.R:162:3',
  'test-query-no-fail.R:344:3', 'test-query-no-fail.R:450:3',
  'test-query-no-fail.R:558:3', 'test-spot-checks.R:204:3'
• dbms == "postgresql" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:604:3',
  'test-GetCohortBasedCovariates.R:616:3',
  'test-GetCohortBasedCovariates.R:628:3',
  'test-GetCohortBasedCovariates.R:640:3',
  'test-GetCohortBasedCovariates.R:652:3',
  'test-GetCohortBasedCovariates.R:664:3',
  'test-GetCohortBasedCovariates.R:676:3',
  'test-GetCohortBasedCovariates.R:688:3',
  'test-GetCohortBasedCovariates.R:700:3', 'test-query-no-fail.R:146:3',
  'test-query-no-fail.R:328:3', 'test-query-no-fail.R:434:3',
  'test-query-no-fail.R:542:3', 'test-spot-checks.R:190:3'
• dbms == "redshift" is not TRUE (14): 'test-GetCohortBasedCovariates.R:931:3',
  'test-GetCohortBasedCovariates.R:943:3',
  'test-GetCohortBasedCovariates.R:955:3',
  'test-GetCohortBasedCovariates.R:967:3',
  'test-GetCohortBasedCovariates.R:979:3',
  'test-GetCohortBasedCovariates.R:991:3',
  'test-GetCohortBasedCovariates.R:1003:3',
  'test-GetCohortBasedCovariates.R:1015:3',
  'test-GetCohortBasedCovariates.R:1027:3', 'test-query-no-fail.R:170:3',
  'test-query-no-fail.R:352:3', 'test-query-no-fail.R:458:3',
  'test-query-no-fail.R:566:3', 'test-spot-checks.R:211:3'
• dbms == "sql server" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:713:3',
  'test-GetCohortBasedCovariates.R:725:3',
  'test-GetCohortBasedCovariates.R:737:3',
  'test-GetCohortBasedCovariates.R:749:3',
  'test-GetCohortBasedCovariates.R:761:3',
  'test-GetCohortBasedCovariates.R:773:3',
  'test-GetCohortBasedCovariates.R:785:3',
  'test-GetCohortBasedCovariates.R:797:3',
  'test-GetCohortBasedCovariates.R:809:3', 'test-query-no-fail.R:154:3',
  'test-query-no-fail.R:336:3', 'test-query-no-fail.R:442:3',
  'test-query-no-fail.R:550:3', 'test-spot-checks.R:197:3'
• dbms == "sqlite" && exists("eunomiaConnection") is not TRUE (21):
  'test-Aggregation.R:33:3', 'test-CovariateData.R:82:3',
  'test-GetCohortBasedCovariates.R:482:3',
  'test-GetCohortBasedCovariates.R:492:3', 'test-GetCovariates.R:37:3',
  'test-GetCovariates.R:75:3', 'test-GetCovariates.R:137:3',
  'test-GetCovariates.R:179:3',
  'test-GetCovariatesFromCohortAttributes.R:10:3',
  'test-GetCovariatesFromCohortAttributes.R:20:3',
  'test-GetCovariatesFromCohortAttributes.R:73:3',
  'test-GetCovariatesTemporalSequence.R:49:3', 'test-HelperFunctions.R:6:3',
  'test-PostcoordConcepts.R:6:3', 'test-Table1.R:13:3',
  'test-query-no-fail.R:178:3', 'test-query-no-fail.R:360:3',
  'test-query-no-fail.R:466:3', 'test-query-no-fail.R:574:3',
  'test-spot-checks.R:218:3', 'test-tidyCovariates.R:81:3'

[ FAIL 0 | WARN 3 | SKIP 104 | PASS 66 ]
> 
> proc.time()
   user  system elapsed 
  27.32    9.45   33.81