R Under development (unstable) (2025-10-27 r88972 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> options(dbms = "sqlite")
> runTestsOnEunomia <- TRUE
> if (runTestsOnEunomia) {
+   test_check("FeatureExtraction")
+ }
Loading required package: FeatureExtraction
Loading required package: DatabaseConnector
Loading required package: Andromeda
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

************* Testing on sqlite *************

attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB

attempting to extract and load: D:\temp\2025_10_28_09_30_17_25650\RtmpMr5H4u/GiBleed_5.3.zip to: D:\temp\2025_10_28_09_30_17_25650\RtmpMr5H4u/GiBleed_5.3.sqlite
Connecting using SQLite driver
Executing SQL took 0.0317 secs
Cohorts created in table main.cohort
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.845 secs
Constructing features on server
Fetching data from server
Fetching data took 0.775 secs
# CovariateData object

Cohorts of interest IDs: 1, 2

Inherits from Andromeda:
# Andromeda object
# Physical location:  D:\temp\2025_10_28_09_30_17_25650\RtmpMr5H4u\filec1a0159b3415.duckdb

Tables:
$analysisRef (analysisId, analysisName, domainId, startDay, endDay, isBinary, missingMeansZero)
$covariateRef (covariateId, covariateName, analysisId, conceptId)
$covariates (cohortDefinitionId, covariateId, covariateValue, rowId)
Constructing features on server
Fetching data from server
Fetching data took 0.682 secs
Constructing features on server
Fetching data from server
Fetching data took 0.795 secs
Constructing features on server
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.687 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.658 secs
Constructing features on server
Fetching data from server
Fetching data took 0.647 secs
Constructing features on server
Fetching data from server
Fetching data took 0.594 secs
Constructing features on server
Fetching data from server
Fetching data took 0.555 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.856 secs
Constructing features on server
Fetching data from server
Fetching data took 0.794 secs
Aggregating covariates took 1.33 secs
Constructing features on server
Fetching data from server
Fetching data took 0.646 secs
Constructing features on server
Fetching data from server
Fetching data took 0.629 secs
Constructing features on server
Fetching data from server
Fetching data took 0.725 secs
Constructing features on server
Fetching data from server
Fetching data took 0.671 secs
Constructing features on server
Fetching data from server
Fetching data took 0.625 secs
Constructing features on server
Fetching data from server
Fetching data took 0.693 secs
Constructing features on server
Fetching data from server
Fetching data took 0.697 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.947 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.98 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.655 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.746 secs
Tidying covariates took 0.611 secs
Removing 1 redundant covariates
Removing 1 infrequent covariates
Normalizing covariates
Tidying covariates took 2.21 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.827 secs
Removing 0 redundant covariate ID - time ID combinations
Removing 0 infrequent covariates
Normalizing covariates
Tidying covariates took 2.4 secs
Removing 1 redundant covariates
Tidying covariates took 1.58 secs
Removing 1 redundant covariates
Tidying covariates took 2 secs
Removing 1 redundant covariates
Tidying covariates took 1.55 secs
Removing 1 redundant covariates
Tidying covariates took 1.56 secs
Removing 1 redundant covariates
Tidying covariates took 1.6 secs
Removing 1 redundant covariates
Tidying covariates took 1.59 secs
Removing 1 redundant covariates
Tidying covariates took 1.56 secs
Removing 1 redundant covariates
Tidying covariates took 1.6 secs
Removing 1 redundant covariates
Tidying covariates took 1.63 secs
Removing 1 redundant covariates
Tidying covariates took 1.63 secs
[ FAIL 0 | WARN 7 | SKIP 83 | PASS 131 ]

══ Skipped tests (83) ══════════════════════════════════════════════════════════
• On CRAN (27): 'test-Aggregation.R:6:3', 'test-CompareCohorts.R:41:3',
  'test-CovariateData.R:55:3', 'test-CovariateData.R:99:3',
  'test-CovariateData.R:160:3', 'test-CovariateData.R:174:3',
  'test-CovariateData.R:193:3', 'test-GetCohortBasedCovariates.R:515:3',
  'test-GetCohortBasedCovariates.R:526:3',
  'test-GetCohortBasedCovariates.R:537:3',
  'test-GetCohortBasedCovariates.R:548:3',
  'test-GetCohortBasedCovariates.R:559:3',
  'test-GetCohortBasedCovariates.R:570:3',
  'test-GetCohortBasedCovariates.R:581:3',
  'test-GetCohortBasedCovariates.R:592:3', 'test-GetCovariates.R:63:3',
  'test-GetCovariates.R:87:3', 'test-GetCovariates.R:100:3',
  'test-GetCovariates.R:113:3',
  'test-GetCovariatesFromCohortAttributes.R:30:3',
  'test-GetCovariatesFromCohortAttributes.R:51:3',
  'test-GetCovariatesFromCohortAttributes.R:79:3',
  'test-GetCovariatesTemporalSequence.R:83:3',
  'test-GetDefaultCovariates.R:6:3', 'test-HelperFunctions.R:31:3',
  'test-Table1.R:85:3', 'test-Table1.R:146:3'
• dbms == "oracle" is not TRUE (14): 'test-GetCohortBasedCovariates.R:822:3',
  'test-GetCohortBasedCovariates.R:834:3',
  'test-GetCohortBasedCovariates.R:846:3',
  'test-GetCohortBasedCovariates.R:858:3',
  'test-GetCohortBasedCovariates.R:870:3',
  'test-GetCohortBasedCovariates.R:882:3',
  'test-GetCohortBasedCovariates.R:894:3',
  'test-GetCohortBasedCovariates.R:906:3',
  'test-GetCohortBasedCovariates.R:918:3', 'test-query-no-fail.R:162:3',
  'test-query-no-fail.R:344:3', 'test-query-no-fail.R:450:3',
  'test-query-no-fail.R:558:3', 'test-spot-checks.R:204:3'
• dbms == "postgresql" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:604:3',
  'test-GetCohortBasedCovariates.R:616:3',
  'test-GetCohortBasedCovariates.R:628:3',
  'test-GetCohortBasedCovariates.R:640:3',
  'test-GetCohortBasedCovariates.R:652:3',
  'test-GetCohortBasedCovariates.R:664:3',
  'test-GetCohortBasedCovariates.R:676:3',
  'test-GetCohortBasedCovariates.R:688:3',
  'test-GetCohortBasedCovariates.R:700:3', 'test-query-no-fail.R:146:3',
  'test-query-no-fail.R:328:3', 'test-query-no-fail.R:434:3',
  'test-query-no-fail.R:542:3', 'test-spot-checks.R:190:3'
• dbms == "redshift" is not TRUE (14): 'test-GetCohortBasedCovariates.R:931:3',
  'test-GetCohortBasedCovariates.R:943:3',
  'test-GetCohortBasedCovariates.R:955:3',
  'test-GetCohortBasedCovariates.R:967:3',
  'test-GetCohortBasedCovariates.R:979:3',
  'test-GetCohortBasedCovariates.R:991:3',
  'test-GetCohortBasedCovariates.R:1003:3',
  'test-GetCohortBasedCovariates.R:1015:3',
  'test-GetCohortBasedCovariates.R:1027:3', 'test-query-no-fail.R:170:3',
  'test-query-no-fail.R:352:3', 'test-query-no-fail.R:458:3',
  'test-query-no-fail.R:566:3', 'test-spot-checks.R:211:3'
• dbms == "sql server" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:713:3',
  'test-GetCohortBasedCovariates.R:725:3',
  'test-GetCohortBasedCovariates.R:737:3',
  'test-GetCohortBasedCovariates.R:749:3',
  'test-GetCohortBasedCovariates.R:761:3',
  'test-GetCohortBasedCovariates.R:773:3',
  'test-GetCohortBasedCovariates.R:785:3',
  'test-GetCohortBasedCovariates.R:797:3',
  'test-GetCohortBasedCovariates.R:809:3', 'test-query-no-fail.R:154:3',
  'test-query-no-fail.R:336:3', 'test-query-no-fail.R:442:3',
  'test-query-no-fail.R:550:3', 'test-spot-checks.R:197:3'

[ FAIL 0 | WARN 7 | SKIP 83 | PASS 131 ]
Executing SQL took 0.0077 secs
> 
> proc.time()
   user  system elapsed 
 398.62   15.98  400.42