R Under development (unstable) (2025-08-31 r88749 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> options(dbms = "sqlite")
> runTestsOnEunomia <- TRUE
> if (runTestsOnEunomia) {
+   test_check("FeatureExtraction")
+ }
Loading required package: FeatureExtraction
Loading required package: DatabaseConnector
Loading required package: Andromeda
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

************* Testing on sqlite *************

attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB

attempting to extract and load: D:\temp\2025_09_01_17_20_17_14443\RtmpMJu18e/GiBleed_5.3.zip to: D:\temp\2025_09_01_17_20_17_14443\RtmpMJu18e/GiBleed_5.3.sqlite
Connecting using SQLite driver
Executing SQL took 0.0262 secs
Cohorts created in table main.cohort
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.693 secs
Constructing features on server
Fetching data from server
Fetching data took 0.384 secs
# CovariateData object

Cohorts of interest IDs: 1, 2

Inherits from Andromeda:
# Andromeda object
# Physical location:  D:\temp\2025_09_01_17_20_17_14443\RtmpMJu18e\file1d5882e9262c2.duckdb

Tables:
$analysisRef (analysisId, analysisName, domainId, startDay, endDay, isBinary, missingMeansZero)
$covariateRef (covariateId, covariateName, analysisId, conceptId)
$covariates (cohortDefinitionId, covariateId, covariateValue, rowId)
Constructing features on server
Fetching data from server
Fetching data took 0.317 secs
Constructing features on server
Fetching data from server
Fetching data took 0.287 secs
Constructing features on server
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.356 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.301 secs
Constructing features on server
Fetching data from server
Fetching data took 0.282 secs
Constructing features on server
Fetching data from server
Fetching data took 0.288 secs
Constructing features on server
Fetching data from server
Fetching data took 0.296 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.344 secs
Constructing features on server
Fetching data from server
Fetching data took 0.297 secs
Aggregating covariates took 0.854 secs
Constructing features on server
Fetching data from server
Fetching data took 0.294 secs
Constructing features on server
Fetching data from server
Fetching data took 0.299 secs
Constructing features on server
Fetching data from server
Fetching data took 0.276 secs
Constructing features on server
Fetching data from server
Fetching data took 0.297 secs
Constructing features on server
Fetching data from server
Fetching data took 0.285 secs
Constructing features on server
Fetching data from server
Fetching data took 0.418 secs
Constructing features on server
Fetching data from server
Fetching data took 0.425 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.358 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.415 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.294 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.396 secs
Tidying covariates took 0.261 secs
Removing 1 redundant covariates
Removing 1 infrequent covariates
Normalizing covariates
Tidying covariates took 1.26 secs
Sending temp tables to server
Constructing features on server
Fetching data from server
Fetching data took 0.338 secs
Removing 0 redundant covariate ID - time ID combinations
Removing 0 infrequent covariates
Normalizing covariates
Tidying covariates took 1.56 secs
[ FAIL 0 | WARN 7 | SKIP 83 | PASS 130 ]

══ Skipped tests (83) ══════════════════════════════════════════════════════════
• On CRAN (27): 'test-Aggregation.R:6:3', 'test-CompareCohorts.R:41:3',
  'test-CovariateData.R:55:3', 'test-CovariateData.R:99:3',
  'test-CovariateData.R:160:3', 'test-CovariateData.R:174:3',
  'test-CovariateData.R:193:3', 'test-GetCohortBasedCovariates.R:515:3',
  'test-GetCohortBasedCovariates.R:526:3',
  'test-GetCohortBasedCovariates.R:537:3',
  'test-GetCohortBasedCovariates.R:548:3',
  'test-GetCohortBasedCovariates.R:559:3',
  'test-GetCohortBasedCovariates.R:570:3',
  'test-GetCohortBasedCovariates.R:581:3',
  'test-GetCohortBasedCovariates.R:592:3', 'test-GetCovariates.R:63:3',
  'test-GetCovariates.R:87:3', 'test-GetCovariates.R:100:3',
  'test-GetCovariates.R:113:3',
  'test-GetCovariatesFromCohortAttributes.R:30:3',
  'test-GetCovariatesFromCohortAttributes.R:51:3',
  'test-GetCovariatesFromCohortAttributes.R:79:3',
  'test-GetCovariatesTemporalSequence.R:83:3',
  'test-GetDefaultCovariates.R:6:3', 'test-HelperFunctions.R:31:3',
  'test-Table1.R:85:3', 'test-Table1.R:146:3'
• dbms == "oracle" is not TRUE (14): 'test-GetCohortBasedCovariates.R:822:3',
  'test-GetCohortBasedCovariates.R:834:3',
  'test-GetCohortBasedCovariates.R:846:3',
  'test-GetCohortBasedCovariates.R:858:3',
  'test-GetCohortBasedCovariates.R:870:3',
  'test-GetCohortBasedCovariates.R:882:3',
  'test-GetCohortBasedCovariates.R:894:3',
  'test-GetCohortBasedCovariates.R:906:3',
  'test-GetCohortBasedCovariates.R:918:3', 'test-query-no-fail.R:162:3',
  'test-query-no-fail.R:344:3', 'test-query-no-fail.R:450:3',
  'test-query-no-fail.R:558:3', 'test-spot-checks.R:204:3'
• dbms == "postgresql" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:604:3',
  'test-GetCohortBasedCovariates.R:616:3',
  'test-GetCohortBasedCovariates.R:628:3',
  'test-GetCohortBasedCovariates.R:640:3',
  'test-GetCohortBasedCovariates.R:652:3',
  'test-GetCohortBasedCovariates.R:664:3',
  'test-GetCohortBasedCovariates.R:676:3',
  'test-GetCohortBasedCovariates.R:688:3',
  'test-GetCohortBasedCovariates.R:700:3', 'test-query-no-fail.R:146:3',
  'test-query-no-fail.R:328:3', 'test-query-no-fail.R:434:3',
  'test-query-no-fail.R:542:3', 'test-spot-checks.R:190:3'
• dbms == "redshift" is not TRUE (14): 'test-GetCohortBasedCovariates.R:931:3',
  'test-GetCohortBasedCovariates.R:943:3',
  'test-GetCohortBasedCovariates.R:955:3',
  'test-GetCohortBasedCovariates.R:967:3',
  'test-GetCohortBasedCovariates.R:979:3',
  'test-GetCohortBasedCovariates.R:991:3',
  'test-GetCohortBasedCovariates.R:1003:3',
  'test-GetCohortBasedCovariates.R:1015:3',
  'test-GetCohortBasedCovariates.R:1027:3', 'test-query-no-fail.R:170:3',
  'test-query-no-fail.R:352:3', 'test-query-no-fail.R:458:3',
  'test-query-no-fail.R:566:3', 'test-spot-checks.R:211:3'
• dbms == "sql server" is not TRUE (14):
  'test-GetCohortBasedCovariates.R:713:3',
  'test-GetCohortBasedCovariates.R:725:3',
  'test-GetCohortBasedCovariates.R:737:3',
  'test-GetCohortBasedCovariates.R:749:3',
  'test-GetCohortBasedCovariates.R:761:3',
  'test-GetCohortBasedCovariates.R:773:3',
  'test-GetCohortBasedCovariates.R:785:3',
  'test-GetCohortBasedCovariates.R:797:3',
  'test-GetCohortBasedCovariates.R:809:3', 'test-query-no-fail.R:154:3',
  'test-query-no-fail.R:336:3', 'test-query-no-fail.R:442:3',
  'test-query-no-fail.R:550:3', 'test-spot-checks.R:197:3'

[ FAIL 0 | WARN 7 | SKIP 83 | PASS 130 ]
Executing SQL took 0.00581 secs
> 
> proc.time()
   user  system elapsed 
 217.43    6.84  213.62