* using log directory ‘/home/hornik/tmp/CRAN_special_donttest/FORTLS.Rcheck’
* using R Under development (unstable) (2025-06-10 r88298)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* using option ‘--run-donttest’
* checking for file ‘FORTLS/DESCRIPTION’ ... OK
* this is package ‘FORTLS’ version ‘1.5.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/8s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FORTLS’ can be installed ... [38s/39s] OK
* used C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/16s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [20m/19m] ERROR
Running examples in ‘FORTLS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tree.detection.several.plots
> ### Title: Tree-Level Variables Estimation for Several Plots
> ### Aliases: tree.detection.several.plots
> 
> ### ** Examples
> 
> 
> ## No test: 
> 
> # Establishment of working directories (optional)
> # By default here we propose the current working directory of the R process
> 
> dir.data <- tempdir()
> dir.result <- tempdir()
> 
> # Loading example data (LAZ files) to dir.data
> 
> download.file(
+ "www.dropbox.com/scl/fi/hzzrt0a39crdy6uvcj9el/PinusSylve1.laz?rlkey=svpwvorkm8889fgbnj14ns1f2&dl=1",
+               destfile = file.path(dir.data, "PinusSylvestris1.laz"),
+               mode = "wb")
trying URL 'www.dropbox.com/scl/fi/hzzrt0a39crdy6uvcj9el/PinusSylve1.laz?rlkey=svpwvorkm8889fgbnj14ns1f2&dl=1'
Content type 'application/binary' length 23093707 bytes (22.0 MB)
==================================================
downloaded 22.0 MB

> 
> download.file(
+ "www.dropbox.com/scl/fi/zeszze31jh5m1g4o3ns1o/PinusSylve2.laz?rlkey=wx72bi6ggdc7wedwgzupekp9k&dl=1",
+               destfile = file.path(dir.data, "PinusSylvestris2.laz"),
+               mode = "wb")
trying URL 'www.dropbox.com/scl/fi/zeszze31jh5m1g4o3ns1o/PinusSylve2.laz?rlkey=wx72bi6ggdc7wedwgzupekp9k&dl=1'
Content type 'application/binary' length 19650235 bytes (18.7 MB)
==================================================
downloaded 18.7 MB

> 
> 
> # Tree detection (TLS single-scan aproach)
> 
> id <- c("PinusSylvestris1", "PinusSylvestris2")
> 
> center.coord <- data.frame(id = id,
+                            x = rep(0, length(id)),
+                            y = rep(0, length(id)))
> 
> tree.tls <- tree.detection.several.plots(las.list =
+                                          c("PinusSylvestris1.laz",
+                                            "PinusSylvestris2.laz"),
+ 
+                                          id.list = id,
+ 
+                                          center.coord = center.coord,
+ 
+                                          tls.resolution = list(point.dist = 7.67, tls.dist = 10),
+ 
+                                          max.dist = 5,
+ 
+                                          threads = 2,
+ 
+                                          plot = TRUE)
Computing plot: PinusSylvestris1
Normalizing
Error: File does not exist.
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [5s/5s] OK
  Running ‘testthat.R’ [4s/4s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [207s/158s] OK
* checking PDF version of manual ... [4s/5s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘PiceaAbies.laz’ ‘PiceaAbies.txt’ ‘PinusRadiata.laz’
  ‘PinusRadiata.txt’ ‘RB.G.angle.count.html’ ‘RB.G.fixed.area.html’
  ‘RB.G.k.tree.html’ ‘RB.N.angle.count.html’ ‘RB.N.fixed.area.html’
  ‘RB.N.k.tree.html’ ‘RB.V.angle.count.html’ ‘RB.angle.count.csv’
  ‘RB.d.angle.count.html’ ‘RB.d.fixed.area.html’ ‘RB.d.k.tree.html’
  ‘RB.fixed.area.csv’ ‘RB.h.angle.count.html’ ‘RB.h.fixed.area.html’
  ‘RB.h.k.tree.html’ ‘RB.k.tree.csv’ ‘stem.curve.csv’ ‘tree.tls.csv’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE