R Under development (unstable) (2025-02-18 r87748 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(FAIRmaterials)
> 
> test_check("FAIRmaterials")
[1] "D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\PV"
[1] "Incorrect Unicode property. (U_REGEX_PROPERTY_SYNTAX, context=`D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\PV`)"
Process completed successfully. Outputs saved in the specified folder.
[1] "D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\XRay"
[1] "Back-reference to a non-existent capture group. (U_REGEX_INVALID_BACK_REF, context=`D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\XRay`)"
Process completed successfully. Outputs saved in the specified folder.
[1] "D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\XRay"
[1] "Back-reference to a non-existent capture group. (U_REGEX_INVALID_BACK_REF, context=`D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\XRay`)"
Process completed successfully. Outputs saved in the specified folder.
[1] "D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\XRay"
[1] "Back-reference to a non-existent capture group. (U_REGEX_INVALID_BACK_REF, context=`D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\XRay`)"
Process completed successfully. Outputs saved in the specified folder.
[1] "D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\output"
[1] "Back-reference to a non-existent capture group. (U_REGEX_INVALID_BACK_REF, context=`D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\output`)"
[1] "D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\output/PV"
[1] "Back-reference to a non-existent capture group. (U_REGEX_INVALID_BACK_REF, context=`D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\output`)"
[1] "D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\output/XRay"
[1] "Back-reference to a non-existent capture group. (U_REGEX_INVALID_BACK_REF, context=`D:\\temp\\2025_02_19_18_50_17_30060\\Rtmp6BgNCg\\output`)"
Process completed successfully. Outputs saved in the specified folder.
[ FAIL 17 | WARN 4 | SKIP 0 | PASS 0 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-process_ontology_files.R:22:3'): The output files are correctly generated for PV data ──
file.exists(file.path(output_dir, paste0(dir_foldername, "_ontology_data-output.ttl"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
TTL output file is missing for PV data
── Failure ('test-process_ontology_files.R:26:3'): The output files are correctly generated for PV data ──
file.exists(file.path(output_dir, paste0(dir_foldername, "_ontology_data-output.jsonld"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
JSON-LD output file is missing for PV data
── Failure ('test-process_ontology_files.R:30:3'): The output files are correctly generated for PV data ──
file.exists(file.path(output_dir, "rdf_graph_graphviz.svg")) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
SVG plot output file is missing for PV data
── Failure ('test-process_ontology_files.R:56:3'): The output files are correctly generated for XRay data ──
file.exists(file.path(output_dir, paste0(dir_foldername, "_ontology_data-output.ttl"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
TTL output file is missing for XRay data
── Failure ('test-process_ontology_files.R:60:3'): The output files are correctly generated for XRay data ──
file.exists(file.path(output_dir, paste0(dir_foldername, "_ontology_data-output.jsonld"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
JSON-LD output file is missing for XRay data
── Failure ('test-process_ontology_files.R:64:3'): The output files are correctly generated for XRay data ──
file.exists(file.path(output_dir, "rdf_graph_graphviz.svg")) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
SVG plot output file is missing for XRay data
── Error ('test-process_ontology_files.R:89:3'): Output files are correctly generated and different with external ontology info for XRay data ──
Error in `file(con, "r")`: cannot open the connection
Backtrace:
    ▆
 1. └─base::readLines(...) at test-process_ontology_files.R:89:3
 2.   └─base::file(con, "r")
── Error ('test-process_ontology_files.R:138:3'): Output files are correctly generated and different with value type inclusion for XRay data ──
Error in `file(con, "r")`: cannot open the connection
Backtrace:
    ▆
 1. └─base::readLines(file.path(output_dir, "rdf_graph_graphviz.svg")) at test-process_ontology_files.R:138:3
 2.   └─base::file(con, "r")
── Failure ('test-process_ontology_files.R:188:5'): The output files are correctly generated for merged data ──
file.exists(file.path(sub_dir, paste0(sub_dir_foldername, "_ontology_data-output.ttl"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
TTL output file is missing in PV
── Failure ('test-process_ontology_files.R:192:5'): The output files are correctly generated for merged data ──
file.exists(file.path(sub_dir, paste0(sub_dir_foldername, "_ontology_data-output.jsonld"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
JSON-LD output file is missing in PV
── Failure ('test-process_ontology_files.R:196:5'): The output files are correctly generated for merged data ──
file.exists(file.path(sub_dir, "rdf_graph_graphviz.svg")) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
SVG plot output file is missing in PV
── Failure ('test-process_ontology_files.R:188:5'): The output files are correctly generated for merged data ──
file.exists(file.path(sub_dir, paste0(sub_dir_foldername, "_ontology_data-output.ttl"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
TTL output file is missing in XRay
── Failure ('test-process_ontology_files.R:192:5'): The output files are correctly generated for merged data ──
file.exists(file.path(sub_dir, paste0(sub_dir_foldername, "_ontology_data-output.jsonld"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
JSON-LD output file is missing in XRay
── Failure ('test-process_ontology_files.R:196:5'): The output files are correctly generated for merged data ──
file.exists(file.path(sub_dir, "rdf_graph_graphviz.svg")) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
SVG plot output file is missing in XRay
── Failure ('test-process_ontology_files.R:201:3'): The output files are correctly generated for merged data ──
file.exists(file.path(output_dir, paste0(dir_foldername, "_ontology_data-output.ttl"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
TTL output file is missing in data
── Failure ('test-process_ontology_files.R:205:3'): The output files are correctly generated for merged data ──
file.exists(file.path(output_dir, paste0(dir_foldername, "_ontology_data-output.jsonld"))) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
JSON-LD output file is missing in data
── Failure ('test-process_ontology_files.R:209:3'): The output files are correctly generated for merged data ──
file.exists(file.path(output_dir, "rdf_graph_graphviz.svg")) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
SVG plot output file is missing in data

[ FAIL 17 | WARN 4 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted