downloading reverse dependencies ‘bshazard’, ‘codeCollection’, ‘cohorttools’, ‘dani’, ‘flexrsurv’, ‘Greg’, ‘MCARtest’, ‘popEpi’, ‘pubh’, ‘TwoTimeScales’, ‘biostat3’, ‘catregs’, ‘fmsb’, ‘mable’, ‘metafor’, ‘pander’, ‘shinyPredict’ trying URL 'file:///data/Repositories/CRAN/src/contrib/bshazard_1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/codeCollection_0.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cohorttools_0.1.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/dani_0.1-1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/flexrsurv_2.0.18.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Greg_2.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MCARtest_1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/popEpi_0.4.14.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pubh_3.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TwoTimeScales_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/biostat3_0.2.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/catregs_1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fmsb_0.7.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mable_4.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/metafor_4.8-0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pander_0.6.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shinyPredict_0.1.1.tar.gz' installing dependencies ‘bshazard’, ‘demography’, ‘descr’, ‘easystats’, ‘Epi’, ‘estmeansd’, ‘glmulti’, ‘Gmisc’, ‘ICsurv’, ‘interval’, ‘ISwR’, ‘JOPS’, ‘LMMsolver’, ‘LowRankQP’, ‘metaBLUE’, ‘mexhaz’, ‘missMethods’, ‘multimode’, ‘orthogonalsplinebasis’, ‘popEpi’, ‘Rcsdp’, ‘relsurv’, ‘wildmeta’ also installing the dependencies ‘ftsa’, ‘HMDHFDplus’, ‘report’, ‘perm’, ‘Icens’, ‘robumeta’ begin installing package ‘HMDHFDplus’ begin installing package ‘ftsa’ begin installing package ‘report’ begin installing package ‘perm’ begin installing package ‘Icens’ begin installing package ‘robumeta’ begin installing package ‘orthogonalsplinebasis’ begin installing package ‘relsurv’ begin installing package ‘mexhaz’ begin installing package ‘Gmisc’ begin installing package ‘Rcsdp’ begin installing package ‘missMethods’ begin installing package ‘ISwR’ begin installing package ‘JOPS’ begin installing package ‘LMMsolver’ begin installing package ‘LowRankQP’ begin installing package ‘ICsurv’ begin installing package ‘multimode’ begin installing package ‘metaBLUE’ begin installing package ‘glmulti’ begin installing package ‘descr’ begin installing package ‘Epi’ * installing *source* package ‘LowRankQP’ ... ** this is package ‘LowRankQP’ version ‘1.0.6’ ** package ‘LowRankQP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpabkFWQ/R.INSTALL276d7b6e8ee3d1/LowRankQP/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LowRankQP.c -o LowRankQP.o LowRankQP.c: In function ‘LowRankQP’: LowRankQP.c:835:9: warning: ‘dbeta’ may be used uninitialized [-Wmaybe-uninitialized] 835 | LRQPCalcStats( n, m, p, Q, c, A, b, u, alpha, beta, xi, zeta, dalpha, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 | dbeta, dxi, dzeta, UminusAlpha, XiOnUminusAlpha, ZetaOnAlpha, w, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 | r2, D, &prim, &dual, &comp, &gap, &term, &mult, &t ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:745:13: note: ‘dbeta’ was declared here 745 | double *dbeta; | ^~~~~ LowRankQP.c:835:9: warning: ‘r2’ may be used uninitialized [-Wmaybe-uninitialized] 835 | LRQPCalcStats( n, m, p, Q, c, A, b, u, alpha, beta, xi, zeta, dalpha, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 | dbeta, dxi, dzeta, UminusAlpha, XiOnUminusAlpha, ZetaOnAlpha, w, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 | r2, D, &prim, &dual, &comp, &gap, &term, &mult, &t ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:757:13: note: ‘r2’ was declared here 757 | double *r2; | ^~ LowRankQP.c:857:9: warning: ‘R’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:763:13: note: ‘R’ was declared here 763 | double *R; | ^ LowRankQP.c:857:9: warning: ‘buffMxP’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:766:13: note: ‘buffMxP’ was declared here 766 | double *buffMxP; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffPxP’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:767:13: note: ‘buffPxP’ was declared here 767 | double *buffPxP; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffPx1’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:768:13: note: ‘buffPx1’ was declared here 768 | double *buffPx1; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘M’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:770:13: note: ‘M’ was declared here 770 | double *M; | ^ LowRankQP.c:857:9: warning: ‘pivN’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:771:13: note: ‘pivN’ was declared here 771 | int *pivN; | ^~~~ LowRankQP.c:846:9: warning: ‘buffNxM’ may be used uninitialized [-Wmaybe-uninitialized] 846 | LRQPFactorize( n, m, method, Q, D, M, pivN, buffNxM, P, Beta, Lambda, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 | LambdaTemp, T ); | ~~~~~~~~~~~~~~~ LowRankQP.c:773:13: note: ‘buffNxM’ was declared here 773 | double *buffNxM; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffMx1’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:774:13: note: ‘buffMx1’ was declared here 774 | double *buffMx1; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘P’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:776:13: note: ‘P’ was declared here 776 | double *P; | ^ LowRankQP.c:857:9: warning: ‘Beta’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:777:13: note: ‘Beta’ was declared here 777 | double *Beta; | ^~~~ LowRankQP.c:857:9: warning: ‘Lambda’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:778:13: note: ‘Lambda’ was declared here 778 | double *Lambda; | ^~~~~~ LowRankQP.c:857:9: warning: ‘LambdaTemp’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:779:13: note: ‘LambdaTemp’ was declared here 779 | double *LambdaTemp; | ^~~~~~~~~~ LowRankQP.c:857:9: warning: ‘T’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:780:13: note: ‘T’ was declared here 780 | double *T; | ^ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LowRankQP_init.c -o LowRankQP_init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o LowRankQP.so LowRankQP.o LowRankQP_init.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpabkFWQ/R.INSTALL276d7b6e8ee3d1/LowRankQP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LowRankQP/00new/LowRankQP/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LowRankQP) * installing *source* package ‘perm’ ... ** this is package ‘perm’ version ‘1.0-0.4’ ** package ‘perm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (perm) * installing *source* package ‘ISwR’ ... ** this is package ‘ISwR’ version ‘2.0-11’ ** package ‘ISwR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ISwR) * installing *source* package ‘ICsurv’ ... ** this is package ‘ICsurv’ version ‘1.0.1’ ** package ‘ICsurv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ICsurv) * installing *source* package ‘orthogonalsplinebasis’ ... ** this is package ‘orthogonalsplinebasis’ version ‘0.1.7’ ** package ‘orthogonalsplinebasis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘integrate’ in package ‘orthogonalsplinebasis’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orthogonalsplinebasis) * installing *source* package ‘robumeta’ ... ** this is package ‘robumeta’ version ‘2.1’ ** package ‘robumeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robumeta) begin installing package ‘wildmeta’ * installing *source* package ‘missMethods’ ... ** this is package ‘missMethods’ version ‘0.4.0’ ** package ‘missMethods’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missMethods) * installing *source* package ‘descr’ ... ** this is package ‘descr’ version ‘1.1.8’ ** package ‘descr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2A6eCB/R.INSTALL276d7f7797a4a6/descr/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c descr.c -o descr.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o descr.so descr.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2A6eCB/R.INSTALL276d7f7797a4a6/descr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-descr/00new/descr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (descr) * installing *source* package ‘metaBLUE’ ... ** this is package ‘metaBLUE’ version ‘1.0.0’ ** package ‘metaBLUE’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metaBLUE) begin installing package ‘estmeansd’ * installing *source* package ‘HMDHFDplus’ ... ** this is package ‘HMDHFDplus’ version ‘2.0.8’ ** package ‘HMDHFDplus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HMDHFDplus) * installing *source* package ‘Icens’ ... ** this is package ‘Icens’ version ‘1.83.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Icens) begin installing package ‘interval’ * installing *source* package ‘glmulti’ ... ** this is package ‘glmulti’ version ‘1.0.8’ ** package ‘glmulti’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘getfit’ with signature ‘object="coxph"’: no definition for class “coxph” in method for ‘getfit’ with signature ‘object="coxph.null"’: no definition for class “coxph.null” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmulti) * installing *source* package ‘estmeansd’ ... ** this is package ‘estmeansd’ version ‘1.0.1’ ** package ‘estmeansd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (estmeansd) * installing *source* package ‘wildmeta’ ... ** this is package ‘wildmeta’ version ‘0.3.2’ ** package ‘wildmeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wildmeta) * installing *source* package ‘Rcsdp’ ... ** this is package ‘Rcsdp’ version ‘0.1.57.6’ ** package ‘Rcsdp’ successfully unpacked and MD5 sums checked ** using staged installation Using bundled CSDP checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking how to run the C preprocessor... gcc-15 -E configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5I3SsF/R.INSTALL276d7035b52f46/Rcsdp/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rcsdp.c -o Rcsdp.o Rcsdp.c: In function ‘csdp’: Rcsdp.c:37:47: warning: variable ‘blocksizes’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~~~~ Rcsdp.c:37:34: warning: variable ‘blocktypes’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~~~~ Rcsdp.c:37:10: warning: variable ‘nblocks’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~ Rcsdp.c: In function ‘writesdpa’: Rcsdp.c:230:10: warning: variable ‘nblocks’ set but not used [-Wunused-but-set-variable] 230 | int n, nblocks, nconstraints, status; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c convert.c -o convert.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testing.c -o testing.o (cd Csdp/lib && \ (make libsdp.a CC="gcc-15" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include" AR="ar" RANLIB="ranlib") && \ touch Csdp.ts) make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp5I3SsF/R.INSTALL276d7035b52f46/Rcsdp/src/Csdp/lib' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o readprob.o readprob.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o sdp.o sdp.c sdp.c: In function ‘sdp’: sdp.c:748: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 748 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k,workvec8) private(i,j) sdp.c:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(O,k,ldam) sdp.c:142:7: warning: variable ‘lastimprove’ set but not used [-Wunused-but-set-variable] 142 | int lastimprove=0; | ^~~~~~~~~~~ sdp.c:131:10: warning: variable ‘newdobj’ set but not used [-Wunused-but-set-variable] 131 | double newdobj; | ^~~~~~~ sdp.c:130:10: warning: variable ‘newpobj’ set but not used [-Wunused-but-set-variable] 130 | double newpobj; | ^~~~~~~ sdp.c:129:10: warning: variable ‘oldmaxrelinfeas’ set but not used [-Wunused-but-set-variable] 129 | double oldmaxrelinfeas=1.0e100; | ^~~~~~~~~~~~~~~ sdp.c:112:10: warning: variable ‘oldmu’ set but not used [-Wunused-but-set-variable] 112 | double oldmu; | ^~~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o op_o.o op_o.c op_o.c: In function ‘op_o’: op_o.c:124: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 124 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k) private(j,i) op_o.c:136: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 136 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(k,constraints,byblocks,Zi,X,O,work1, work2, work, ldam) private(j, ii, jj, blocksize, p, q, r, s, ptri, ptrj, blocknum, contrib, Ziblk, Xblk, workblk, work2blk, enti, entj, scale1, scale2, thread_num) op_o.c:432: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 432 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k) private(j,i) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o psd_feas.o psd_feas.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o op_a.o op_a.c op_a.c: In function ‘op_a’: op_a.c:23: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 23 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,contrib,ptr,blk,nume,vec,j,p,mat,ent,q) shared(k,constraints,result,X) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o op_at.o op_at.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o Fnorm.o Fnorm.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o calc_pobj.o calc_pobj.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o calc_dobj.o calc_dobj.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o trace_prod.o trace_prod.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o zero_mat.o zero_mat.c zero_mat.c: In function ‘zero_mat’: zero_mat.c:32: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 32 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(A,blk) private(j,i) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o mat_mult.o mat_mult.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o sym_mat.o sym_mat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o copy_mat.o copy_mat.c copy_mat.c: In function ‘copy_mat’: copy_mat.c:27: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 27 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o addscaledmat.o addscaledmat.c addscaledmat.c: In function ‘addscaledmat’: addscaledmat.c:30: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 30 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(A,B,C,scale,blk) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o user_exit.o user_exit.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o make_i.o make_i.c make_i.c: In function ‘make_i’: make_i.c:24: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 24 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,p,A) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o allocmat.o allocmat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o initsoln.o initsoln.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o initparams.o initparams.c initparams.c: In function ‘initparams’: initparams.c:33:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 33 | int ret = fscanf(paramfile,"%*[^=]%*c%lf",&(params->axtol)); | ^~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o add_mat.o add_mat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o writesol.o writesol.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o readsol.o readsol.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o easysdp.o easysdp.c easysdp.c: In function ‘easy_sdp’: easysdp.c:61:7: warning: variable ‘blk’ set but not used [-Wunused-but-set-variable] 61 | int blk; | ^~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o writeprob.o writeprob.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o solvesys.o solvesys.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o makefill.o makefill.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o mat_multsp.o mat_multsp.c mat_multsp.c: In function ‘mat_multspb’: mat_multsp.c:171: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 171 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,C,scale2) mat_multsp.c:57:7: warning: unused variable ‘thread_num’ [-Wunused-variable] 57 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:56:7: warning: unused variable ‘total_threads’ [-Wunused-variable] 56 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c: In function ‘mat_multspa’: mat_multsp.c:410: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 410 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2) mat_multsp.c:295:7: warning: unused variable ‘thread_num’ [-Wunused-variable] 295 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:294:7: warning: unused variable ‘total_threads’ [-Wunused-variable] 294 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c: In function ‘mat_multspc’: mat_multsp.c:595: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 595 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,ii,p,q,temp) shared(ptr,A,B,C,blk,blksize,scale1) mat_multsp.c:636: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 636 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o norms.o norms.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o linesearch.o linesearch.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o matvec.o matvec.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o chol.o chol.c chol.c: In function ‘chol_inv’: chol.c:150:10: warning: variable ‘scale’ set but not used [-Wunused-but-set-variable] 150 | double scale; | ^~~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o qreig.o qreig.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o tweakgap.o tweakgap.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o freeprob.o freeprob.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o packed.o packed.c packed.c: In function ‘store_packed’: packed.c:30: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 30 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n) packed.c: In function ‘store_unpacked’: packed.c:63: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 63 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n) packed.c: In function ‘triu’: packed.c:188: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 188 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(A,n) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R-d-gcc-15/include -c -o sortentries.o sortentries.c ar cr libsdp.a readprob.o sdp.o op_o.o psd_feas.o op_a.o op_at.o Fnorm.o calc_pobj.o calc_dobj.o trace_prod.o zero_mat.o mat_mult.o sym_mat.o copy_mat.o addscaledmat.o user_exit.o make_i.o allocmat.o initsoln.o initparams.o add_mat.o writesol.o readsol.o easysdp.o writeprob.o solvesys.o makefill.o mat_multsp.o norms.o linesearch.o matvec.o chol.o qreig.o tweakgap.o freeprob.o packed.o sortentries.o make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5I3SsF/R.INSTALL276d7035b52f46/Rcsdp/src/Csdp/lib' gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Rcsdp.so Rcsdp.o convert.o testing.o -LCsdp/lib -lsdp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lm -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5I3SsF/R.INSTALL276d7035b52f46/Rcsdp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rcsdp/00new/Rcsdp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcsdp) * installing *source* package ‘multimode’ ... ** this is package ‘multimode’ version ‘1.5’ ** package ‘multimode’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpb3Mspt/R.INSTALL276d81278c0fc0/multimode/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BinDist2.c -o BinDist2.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c excmasapp.f90 -o excmasapp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c multimode_init.c -o multimode_init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o multimode.so BinDist2.o excmasapp.o multimode_init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpb3Mspt/R.INSTALL276d81278c0fc0/multimode/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-multimode/00new/multimode/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multimode) * installing *source* package ‘report’ ... ** this is package ‘report’ version ‘0.6.3’ ** package ‘report’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (report) begin installing package ‘easystats’ * installing *source* package ‘interval’ ... ** this is package ‘interval’ version ‘1.1-1.0’ ** package ‘interval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (interval) * installing *source* package ‘JOPS’ ... ** this is package ‘JOPS’ version ‘0.2.0’ ** package ‘JOPS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JOPS) * installing *source* package ‘easystats’ ... ** this is package ‘easystats’ version ‘0.7.5’ ** package ‘easystats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (easystats) * installing *source* package ‘Epi’ ... ** this is package ‘Epi’ version ‘2.64’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpu3k3qA/R.INSTALL276d8774389a5/Epi/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chinv2.c -o chinv2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cholesky2.c -o cholesky2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chsolve2.c -o chsolve2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clogit.c -o clogit.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Epi.so chinv2.o cholesky2.o chsolve2.o clogit.o init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpu3k3qA/R.INSTALL276d8774389a5/Epi/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Epi/00new/Epi/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Epi) begin installing package ‘popEpi’ begin installing package ‘bshazard’ * installing *source* package ‘mexhaz’ ... ** this is package ‘mexhaz’ version ‘2.6’ ** package ‘mexhaz’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqxUmm9/R.INSTALL276d5a5fc2e534/mexhaz/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs0R.c -o DeltaBs0R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs1R.c -o DeltaBs1R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs23R.c -o DeltaBs23R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaNsR.c -o DeltaNsR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaWeibR.c -o DeltaWeibR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FrailtyAdapt.c -o FrailtyAdapt.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FrailtyAdaptL.c -o FrailtyAdaptL.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GaussProcLIN.c -o GaussProcLIN.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GaussProcNPH.c -o GaussProcNPH.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsL.c -o HGHAggr_BsL.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsLx.c -o HGHAggr_BsLx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsR.c -o HGHAggr_BsR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsRx.c -o HGHAggr_BsRx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsL.c -o HGHAggr_NsL.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsLx.c -o HGHAggr_NsLx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsR.c -o HGHAggr_NsR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsRx.c -o HGHAggr_NsRx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_Pois.c -o HGHAggr_Pois.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwL.c -o HGHAggr_PwL.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwLx.c -o HGHAggr_PwLx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwR.c -o HGHAggr_PwR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwRx.c -o HGHAggr_PwRx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbL.c -o HGHAggr_WbL.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbLx.c -o HGHAggr_WbLx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbR.c -o HGHAggr_WbR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbRx.c -o HGHAggr_WbRx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_BsR.c -o HGH_BsR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_BsRx.c -o HGH_BsRx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_NsR.c -o HGH_NsR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_NsRx.c -o HGH_NsRx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_PwR.c -o HGH_PwR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_PwRx.c -o HGH_PwRx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_WbR.c -o HGH_WbR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_WbRx.c -o HGH_WbRx.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0C.c -o HazardBs0C.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0L.c -o HazardBs0L.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0R.c -o HazardBs0R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1C.c -o HazardBs1C.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1L.c -o HazardBs1L.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1R.c -o HazardBs1R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23C.c -o HazardBs23C.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23L.c -o HazardBs23L.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23R.c -o HazardBs23R.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsC.c -o HazardNsC.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsL.c -o HazardNsL.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsR.c -o HazardNsR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibC.c -o HazardWeibC.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibL.c -o HazardWeibL.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibR.c -o HazardWeibR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c OptFunc.c -o OptFunc.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SplineFunc.c -o SplineFunc.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mexhaz.so DeltaBs0R.o DeltaBs1R.o DeltaBs23R.o DeltaNsR.o DeltaWeibR.o FrailtyAdapt.o FrailtyAdaptL.o GaussProcLIN.o GaussProcNPH.o HGHAggr_BsL.o HGHAggr_BsLx.o HGHAggr_BsR.o HGHAggr_BsRx.o HGHAggr_NsL.o HGHAggr_NsLx.o HGHAggr_NsR.o HGHAggr_NsRx.o HGHAggr_Pois.o HGHAggr_PwL.o HGHAggr_PwLx.o HGHAggr_PwR.o HGHAggr_PwRx.o HGHAggr_WbL.o HGHAggr_WbLx.o HGHAggr_WbR.o HGHAggr_WbRx.o HGH_BsR.o HGH_BsRx.o HGH_NsR.o HGH_NsRx.o HGH_PwR.o HGH_PwRx.o HGH_WbR.o HGH_WbRx.o HazardBs0C.o HazardBs0L.o HazardBs0R.o HazardBs1C.o HazardBs1L.o HazardBs1R.o HazardBs23C.o HazardBs23L.o HazardBs23R.o HazardNsC.o HazardNsL.o HazardNsR.o HazardWeibC.o HazardWeibL.o HazardWeibR.o OptFunc.o SplineFunc.o init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqxUmm9/R.INSTALL276d5a5fc2e534/mexhaz/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mexhaz/00new/mexhaz/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mexhaz) * installing *source* package ‘ftsa’ ... ** this is package ‘ftsa’ version ‘6.6’ ** package ‘ftsa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ftsa) begin installing package ‘demography’ * installing *source* package ‘bshazard’ ... ** this is package ‘bshazard’ version ‘1.2’ ** package ‘bshazard’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bshazard) * installing *source* package ‘Gmisc’ ... ** this is package ‘Gmisc’ version ‘3.2.0’ ** package ‘Gmisc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpw3azWn/R.INSTALL276d6e23183b3/Gmisc/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gmisc_lines.cpp -o Gmisc_lines.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bezierArrowFn.cpp -o bezierArrowFn.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gnrlBezier.cpp -o gnrlBezier.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Gmisc.so Gmisc_lines.o RcppExports.o bezierArrowFn.o gnrlBezier.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpw3azWn/R.INSTALL276d6e23183b3/Gmisc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Gmisc/00new/Gmisc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Gmisc) * installing *source* package ‘LMMsolver’ ... ** this is package ‘LMMsolver’ version ‘1.0.12’ ** package ‘LMMsolver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJRn2J4/R.INSTALL276d781f483b28/LMMsolver/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ADcholesky.cpp -o ADcholesky.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AuxFun.cpp -o AuxFun.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SparseMatrix.cpp -o SparseMatrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cholesky.cpp -o cholesky.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o LMMsolver.so ADcholesky.o AuxFun.o RcppExports.o SparseMatrix.o cholesky.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJRn2J4/R.INSTALL276d781f483b28/LMMsolver/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LMMsolver/00new/LMMsolver/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LMMsolver) * installing *source* package ‘popEpi’ ... ** this is package ‘popEpi’ version ‘0.4.14’ ** package ‘popEpi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (popEpi) * installing *source* package ‘relsurv’ ... ** this is package ‘relsurv’ version ‘2.3-3’ ** package ‘relsurv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0AJW4A/R.INSTALL276d637745c41c/relsurv/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aalen_beta.cpp -o aalen_beta.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cmpfast.c -o cmpfast.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmatrix.c -o dmatrix.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c exps.c -o exps.o exps.c: In function ‘expc’: exps.c:78:65: warning: ‘/*’ within comment [-Wcomment] 78 | /*si2 = (double *)ALLOC(n, sizeof(double)); /*Si for each individual - a je to prav???*/ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastp.c -o netfastp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastpinter.c -o netfastpinter.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastpinter2.c -o netfastpinter2.o netfastpinter2.c: In function ‘netfastpinter2’: netfastpinter2.c:54:1: warning: variable ‘et2’ set but not used [-Wunused-but-set-variable] 54 | et2, | ^~~ netfastpinter2.c:47:3: warning: unused variable ‘nprec’ [-Wunused-variable] 47 | nprec; | ^~~~~ netfastpinter2.c:286:20: warning: ‘sisum’ may be used uninitialized [-Wmaybe-uninitialized] 286 | yidlisi[j]=hazard/sisum; //the total hazard divided by the si at the end of the crude interval | ~~~~~~^~~~~~ netfastpinter2.c:62:1: note: ‘sisum’ was declared here 62 | sisum, | ^~~~~ netfastpinter2.c:287:22: warning: ‘sisumtt’ may be used uninitialized [-Wmaybe-uninitialized] 287 | yidlisitt[j]=hazard/sisumtt; // the total hazard divided by the si at the beginning of the crude interval | ~~~~~~^~~~~~~~ netfastpinter2.c:63:1: note: ‘sisumtt’ was declared here 63 | sisumtt, | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netwei.c -o netwei.o netwei.c: In function ‘netwei’: netwei.c:195:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 195 | for (k=0; k= 3.5.0), utils Imports: cmprsk, etm, splines, MASS, survival, plyr, dplyr, Matrix, numDeriv, data.table, zoo, mgcv, magrittr Timings: user system elapsed Epi 280.737 13.698 298.1 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 17 Check results summary: Epi ... NOTE * checking CRAN incoming feasibility ... [7s/9s] NOTE rdepends_biostat3 ... OK rdepends_bshazard ... OK rdepends_catregs ... OK rdepends_codeCollection ... OK rdepends_cohorttools ... OK rdepends_dani ... OK rdepends_flexrsurv ... OK rdepends_fmsb ... OK rdepends_Greg ... OK rdepends_mable ... OK rdepends_MCARtest ... OK rdepends_metafor ... OK rdepends_pander ... OK rdepends_popEpi ... OK rdepends_pubh ... OK rdepends_shinyPredict ... OK rdepends_TwoTimeScales ... OK Check results changes: Package: bshazard Check: CRAN incoming feasibility Old result: NOTE Package: dani Check: CRAN incoming feasibility Old result: NOTE Package: fmsb Check: CRAN incoming feasibility Old result: NOTE Package: shinyPredict Check: CRAN incoming feasibility Old result: NOTE