downloading reverse dependencies ...
downloading bshazard_1.2.tar.gz ... ok
downloading codeCollection_0.1.3.tar.gz ... ok
downloading cohorttools_0.1.6.tar.gz ... ok
downloading dani_0.1-1.tar.gz ... ok
downloading flexrsurv_2.0.18.tar.gz ... ok
downloading Greg_2.0.2.tar.gz ... ok
downloading MCARtest_1.2.1.tar.gz ... ok
downloading popEpi_0.4.12.tar.gz ... ok
downloading pubh_1.3.7.tar.gz ... ok
downloading biostat3_0.2.1.tar.gz ... ok
downloading catregs_1.2.2.tar.gz ... ok
downloading fmsb_0.7.6.tar.gz ... ok
downloading mable_4.1.0.tar.gz ... ok
downloading metafor_4.6-0.tar.gz ... ok
downloading pander_0.6.5.tar.gz ... ok
downloading shinyPredict_0.1.1.tar.gz ... ok

installing dependencies ‘bshazard’, ‘cardx’, ‘demography’, ‘descr’,
  ‘easystats’, ‘Epi’, ‘estmeansd’, ‘Gmisc’, ‘highs’, ‘ICsurv’,
  ‘interval’, ‘ISwR’, ‘LowRankQP’, ‘metaBLUE’, ‘mexhaz’, ‘missMethods’,
  ‘misty’, ‘moonBook’, ‘multimode’, ‘orthogonalsplinebasis’, ‘popEpi’,
  ‘relsurv’, ‘report’, ‘sjPlot’, ‘sylly.en’, ‘wildmeta’

also installing the dependencies ‘pdfCluster’, ‘evgam’, ‘ROOPSD’, ‘ftsa’, ‘HMDHFDplus’, ‘pammtools’, ‘sjstats’, ‘perm’, ‘Icens’, ‘robumeta’

begin installing package ‘pdfCluster’
begin installing package ‘ROOPSD’
begin installing package ‘evgam’
begin installing package ‘HMDHFDplus’
begin installing package ‘pammtools’
begin installing package ‘sjstats’
begin installing package ‘perm’
begin installing package ‘Icens’
begin installing package ‘robumeta’
begin installing package ‘orthogonalsplinebasis’
begin installing package ‘mexhaz’
begin installing package ‘Gmisc’
begin installing package ‘highs’
begin installing package ‘misty’
begin installing package ‘missMethods’
begin installing package ‘moonBook’
begin installing package ‘cardx’
begin installing package ‘ISwR’
begin installing package ‘report’
begin installing package ‘LowRankQP’
begin installing package ‘ICsurv’
begin installing package ‘multimode’
begin installing package ‘metaBLUE’
begin installing package ‘sylly.en’
begin installing package ‘descr’
begin installing package ‘Epi’
* installing *source* package ‘sylly.en’ ...
** package ‘sylly.en’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sylly.en)
* installing *source* package ‘perm’ ...
** package ‘perm’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (perm)
* installing *source* package ‘robumeta’ ...
** package ‘robumeta’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (robumeta)
begin installing package ‘wildmeta’
* installing *source* package ‘ISwR’ ...
** package ‘ISwR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ISwR)
* installing *source* package ‘LowRankQP’ ...
** package ‘LowRankQP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp65HHpb/R.INSTALLb05f4befc72d/LowRankQP/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c LowRankQP.c -o LowRankQP.o
LowRankQP.c: In function ‘LowRankQP’:
LowRankQP.c:835:9: warning: ‘dbeta’ may be used uninitialized [-Wmaybe-uninitialized]
  835 |         LRQPCalcStats( n, m, p, Q, c, A, b, u, alpha, beta, xi, zeta, dalpha,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  836 |             dbeta, dxi, dzeta, UminusAlpha, XiOnUminusAlpha, ZetaOnAlpha, w, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  837 |             r2, D, &prim, &dual, &comp, &gap, &term, &mult, &t );
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:745:13: note: ‘dbeta’ was declared here
  745 |     double *dbeta;
      |             ^~~~~
LowRankQP.c:835:9: warning: ‘r2’ may be used uninitialized [-Wmaybe-uninitialized]
  835 |         LRQPCalcStats( n, m, p, Q, c, A, b, u, alpha, beta, xi, zeta, dalpha,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  836 |             dbeta, dxi, dzeta, UminusAlpha, XiOnUminusAlpha, ZetaOnAlpha, w, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  837 |             r2, D, &prim, &dual, &comp, &gap, &term, &mult, &t );
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:757:13: note: ‘r2’ was declared here
  757 |     double *r2;
      |             ^~
LowRankQP.c:857:9: warning: ‘R’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:763:13: note: ‘R’ was declared here
  763 |     double *R;
      |             ^
LowRankQP.c:857:9: warning: ‘buffMxP’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:766:13: note: ‘buffMxP’ was declared here
  766 |     double *buffMxP;
      |             ^~~~~~~
LowRankQP.c:857:9: warning: ‘buffPxP’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:767:13: note: ‘buffPxP’ was declared here
  767 |     double *buffPxP;
      |             ^~~~~~~
LowRankQP.c:857:9: warning: ‘buffPx1’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:768:13: note: ‘buffPx1’ was declared here
  768 |     double *buffPx1;
      |             ^~~~~~~
LowRankQP.c:857:9: warning: ‘M’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:770:13: note: ‘M’ was declared here
  770 |     double *M;
      |             ^
LowRankQP.c:857:9: warning: ‘pivN’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:771:13: note: ‘pivN’ was declared here
  771 |     int    *pivN;
      |             ^~~~
LowRankQP.c:846:9: warning: ‘buffNxM’ may be used uninitialized [-Wmaybe-uninitialized]
  846 |         LRQPFactorize( n, m, method, Q, D, M, pivN, buffNxM, P, Beta, Lambda,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  847 |             LambdaTemp, T );
      |             ~~~~~~~~~~~~~~~
LowRankQP.c:773:13: note: ‘buffNxM’ was declared here
  773 |     double *buffNxM;
      |             ^~~~~~~
LowRankQP.c:857:9: warning: ‘buffMx1’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:774:13: note: ‘buffMx1’ was declared here
  774 |     double *buffMx1;
      |             ^~~~~~~
LowRankQP.c:857:9: warning: ‘P’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:776:13: note: ‘P’ was declared here
  776 |     double *P;
      |             ^
LowRankQP.c:857:9: warning: ‘Beta’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:777:13: note: ‘Beta’ was declared here
  777 |     double *Beta;
      |             ^~~~
LowRankQP.c:857:9: warning: ‘Lambda’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:778:13: note: ‘Lambda’ was declared here
  778 |     double *Lambda;
      |             ^~~~~~
LowRankQP.c:857:9: warning: ‘LambdaTemp’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:779:13: note: ‘LambdaTemp’ was declared here
  779 |     double *LambdaTemp;
      |             ^~~~~~~~~~
LowRankQP.c:857:9: warning: ‘T’ may be used uninitialized [-Wmaybe-uninitialized]
  857 |         LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  858 |             dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  859 |             XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  860 |             r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LowRankQP.c:780:13: note: ‘T’ was declared here
  780 |     double *T;
      |             ^
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c LowRankQP_init.c -o LowRankQP_init.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o LowRankQP.so LowRankQP.o LowRankQP_init.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp65HHpb/R.INSTALLb05f4befc72d/LowRankQP/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LowRankQP/00new/LowRankQP/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LowRankQP)
* installing *source* package ‘orthogonalsplinebasis’ ...
** package ‘orthogonalsplinebasis’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘integrate’ in package ‘orthogonalsplinebasis’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (orthogonalsplinebasis)
* installing *source* package ‘ICsurv’ ...
** package ‘ICsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ICsurv)
* installing *source* package ‘missMethods’ ...
** package ‘missMethods’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (missMethods)
* installing *source* package ‘descr’ ...
** package ‘descr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeFdjH8/R.INSTALLb05f86ebd1fe7/descr/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c descr.c -o descr.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o descr.so descr.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeFdjH8/R.INSTALLb05f86ebd1fe7/descr/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-descr/00new/descr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (descr)
* installing *source* package ‘sjstats’ ...
** package ‘sjstats’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sjstats)
begin installing package ‘sjPlot’
* installing *source* package ‘metaBLUE’ ...
** package ‘metaBLUE’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metaBLUE)
begin installing package ‘estmeansd’
* installing *source* package ‘moonBook’ ...
** package ‘moonBook’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (moonBook)
* installing *source* package ‘HMDHFDplus’ ...
** package ‘HMDHFDplus’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HMDHFDplus)
* installing *source* package ‘pdfCluster’ ...
** package ‘pdfCluster’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZnMIQj/R.INSTALLb05aecf85aa8/pdfCluster/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kepdf.c -o kepdf.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c macon.c -o macon.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c nc.c -o nc.o
nc.c:17:27: warning: ‘CEntries’ defined but not used [-Wunused-const-variable=]
   17 | static const R_CMethodDef CEntries[]  = {
      |                           ^~~~~~~~
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pdfCluster_init.c -o pdfCluster_init.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o pdfCluster.so kepdf.o macon.o nc.o pdfCluster_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZnMIQj/R.INSTALLb05aecf85aa8/pdfCluster/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pdfCluster/00new/pdfCluster/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pdfCluster)
* installing *source* package ‘Icens’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Icens)
begin installing package ‘interval’
* installing *source* package ‘cardx’ ...
** package ‘cardx’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cardx)
* installing *source* package ‘ROOPSD’ ...
** package ‘ROOPSD’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ROOPSD)
* installing *source* package ‘estmeansd’ ...
** package ‘estmeansd’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (estmeansd)
* installing *source* package ‘wildmeta’ ...
** package ‘wildmeta’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (wildmeta)
* installing *source* package ‘report’ ...
** package ‘report’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (report)
begin installing package ‘easystats’
* installing *source* package ‘multimode’ ...
** package ‘multimode’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDiETCK/R.INSTALLb05f65d924b2d/multimode/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c BinDist2.c -o BinDist2.o
gfortran-14   -fpic  -g -O2 -Wall -mtune=native  -c  excmasapp.f90 -o excmasapp.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c multimode_init.c -o multimode_init.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o multimode.so BinDist2.o excmasapp.o multimode_init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDiETCK/R.INSTALLb05f65d924b2d/multimode/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-multimode/00new/multimode/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (multimode)
* installing *source* package ‘pammtools’ ...
** package ‘pammtools’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pammtools)
begin installing package ‘relsurv’
* installing *source* package ‘interval’ ...
** package ‘interval’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (interval)
* installing *source* package ‘easystats’ ...
** package ‘easystats’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (easystats)
* installing *source* package ‘Epi’ ...
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpH36wC6/R.INSTALLb05ff29e89b7/Epi/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c chinv2.c -o chinv2.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c cholesky2.c -o cholesky2.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c chsolve2.c -o chsolve2.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c clogit.c -o clogit.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Epi.so chinv2.o cholesky2.o chsolve2.o clogit.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpH36wC6/R.INSTALLb05ff29e89b7/Epi/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Epi/00new/Epi/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Epi)
begin installing package ‘popEpi’
begin installing package ‘bshazard’
* installing *source* package ‘sjPlot’ ...
** package ‘sjPlot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sjPlot)
* installing *source* package ‘mexhaz’ ...
** package ‘mexhaz’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNfdxML/R.INSTALLb05d363dfa994/mexhaz/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DeltaBs0R.c -o DeltaBs0R.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DeltaBs1R.c -o DeltaBs1R.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DeltaBs23R.c -o DeltaBs23R.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DeltaNsR.c -o DeltaNsR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DeltaWeibR.c -o DeltaWeibR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c FrailtyAdapt.c -o FrailtyAdapt.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c FrailtyAdaptL.c -o FrailtyAdaptL.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c GaussProcLIN.c -o GaussProcLIN.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c GaussProcNPH.c -o GaussProcNPH.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_BsL.c -o HGHAggr_BsL.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_BsLx.c -o HGHAggr_BsLx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_BsR.c -o HGHAggr_BsR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_BsRx.c -o HGHAggr_BsRx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_NsL.c -o HGHAggr_NsL.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_NsLx.c -o HGHAggr_NsLx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_NsR.c -o HGHAggr_NsR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_NsRx.c -o HGHAggr_NsRx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_Pois.c -o HGHAggr_Pois.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_PwL.c -o HGHAggr_PwL.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_PwLx.c -o HGHAggr_PwLx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_PwR.c -o HGHAggr_PwR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_PwRx.c -o HGHAggr_PwRx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_WbL.c -o HGHAggr_WbL.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_WbLx.c -o HGHAggr_WbLx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_WbR.c -o HGHAggr_WbR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGHAggr_WbRx.c -o HGHAggr_WbRx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGH_BsR.c -o HGH_BsR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGH_BsRx.c -o HGH_BsRx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGH_NsR.c -o HGH_NsR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGH_NsRx.c -o HGH_NsRx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGH_PwR.c -o HGH_PwR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGH_PwRx.c -o HGH_PwRx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGH_WbR.c -o HGH_WbR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HGH_WbRx.c -o HGH_WbRx.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs0C.c -o HazardBs0C.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs0L.c -o HazardBs0L.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs0R.c -o HazardBs0R.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs1C.c -o HazardBs1C.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs1L.c -o HazardBs1L.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs1R.c -o HazardBs1R.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs23C.c -o HazardBs23C.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs23L.c -o HazardBs23L.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardBs23R.c -o HazardBs23R.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardNsC.c -o HazardNsC.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardNsL.c -o HazardNsL.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardNsR.c -o HazardNsR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardWeibC.c -o HazardWeibC.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardWeibL.c -o HazardWeibL.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HazardWeibR.c -o HazardWeibR.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c OptFunc.c -o OptFunc.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SplineFunc.c -o SplineFunc.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mexhaz.so DeltaBs0R.o DeltaBs1R.o DeltaBs23R.o DeltaNsR.o DeltaWeibR.o FrailtyAdapt.o FrailtyAdaptL.o GaussProcLIN.o GaussProcNPH.o HGHAggr_BsL.o HGHAggr_BsLx.o HGHAggr_BsR.o HGHAggr_BsRx.o HGHAggr_NsL.o HGHAggr_NsLx.o HGHAggr_NsR.o HGHAggr_NsRx.o HGHAggr_Pois.o HGHAggr_PwL.o HGHAggr_PwLx.o HGHAggr_PwR.o HGHAggr_PwRx.o HGHAggr_WbL.o HGHAggr_WbLx.o HGHAggr_WbR.o HGHAggr_WbRx.o HGH_BsR.o HGH_BsRx.o HGH_NsR.o HGH_NsRx.o HGH_PwR.o HGH_PwRx.o HGH_WbR.o HGH_WbRx.o HazardBs0C.o HazardBs0L.o HazardBs0R.o HazardBs1C.o HazardBs1L.o HazardBs1R.o HazardBs23C.o HazardBs23L.o HazardBs23R.o HazardNsC.o HazardNsL.o HazardNsR.o HazardWeibC.o HazardWeibL.o HazardWeibR.o OptFunc.o SplineFunc.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNfdxML/R.INSTALLb05d363dfa994/mexhaz/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mexhaz/00new/mexhaz/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mexhaz)
* installing *source* package ‘Gmisc’ ...
** package ‘Gmisc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5Pxnpv/R.INSTALLb05e31efad660/Gmisc/src'
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Gmisc_lines.cpp -o Gmisc_lines.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bezierArrowFn.cpp -o bezierArrowFn.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gnrlBezier.cpp -o gnrlBezier.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Gmisc.so Gmisc_lines.o RcppExports.o bezierArrowFn.o gnrlBezier.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5Pxnpv/R.INSTALLb05e31efad660/Gmisc/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Gmisc/00new/Gmisc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Gmisc)
* installing *source* package ‘relsurv’ ...
** package ‘relsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKfJwBp/R.INSTALLb0ee09e8adfb/relsurv/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c cmpfast.c -o cmpfast.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c dmatrix.c -o dmatrix.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c exps.c -o exps.o
exps.c: In function ‘expc’:
exps.c:78:65: warning: "/*" within comment [-Wcomment]
   78 |     /*si2 = (double *)ALLOC(n, sizeof(double));                 /*Si for each individual - a je to prav???*/
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c netfastp.c -o netfastp.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c netfastpinter.c -o netfastpinter.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c netfastpinter2.c -o netfastpinter2.o
netfastpinter2.c: In function ‘netfastpinter2’:
netfastpinter2.c:53:13: warning: variable ‘et2’ set but not used [-Wunused-but-set-variable]
   53 |             et2,
      |             ^~~
netfastpinter2.c:46:13: warning: unused variable ‘nprec’ [-Wunused-variable]
   46 |             nprec;
      |             ^~~~~
netfastpinter2.c:278:42: warning: ‘sisum’ may be used uninitialized [-Wmaybe-uninitialized]
  278 |                         yidlisi[j]=hazard/sisum;                                //the total hazard divided by the si at the end of the crude interval
      |                                    ~~~~~~^~~~~~
netfastpinter2.c:61:13: note: ‘sisum’ was declared here
   61 |             sisum,
      |             ^~~~~
netfastpinter2.c:279:44: warning: ‘sisumtt’ may be used uninitialized [-Wmaybe-uninitialized]
  279 |                         yidlisitt[j]=hazard/sisumtt;                                    // the total hazard divided by the si at the beginning of the crude interval
      |                                      ~~~~~~^~~~~~~~
netfastpinter2.c:62:13: note: ‘sisumtt’ was declared here
   62 |             sisumtt,
      |             ^~~~~~~
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c netwei.c -o netwei.o
netwei.c: In function ‘netwei’:
netwei.c:195:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  195 |       for (k=0; k<edim; k++)
      |       ^~~
netwei.c:197:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  197 |         etime -= et2;
      |         ^~~~~
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c netweiDM.c -o netweiDM.o
netweiDM.c: In function ‘netweiDM’:
netweiDM.c:204:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  204 |       for (k=0; k<edim; k++)
      |       ^~~
netweiDM.c:206:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  206 |         etime -= et2;
      |         ^~~~~
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pystep.c -o pystep.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pystep2.c -o pystep2.o
pystep2.c:2:1: warning: "/*" within comment [-Wcomment]
    2 | /*$Id: pystep.c 11166 2008-11-24 22:10:34Z therneau $ */
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o relsurv.so cmpfast.o dmatrix.o exps.o init.o netfastp.o netfastpinter.o netfastpinter2.o netwei.o netweiDM.o pystep.o pystep2.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKfJwBp/R.INSTALLb0ee09e8adfb/relsurv/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-relsurv/00new/relsurv/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (relsurv)
* installing *source* package ‘bshazard’ ...
** package ‘bshazard’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bshazard)
* installing *source* package ‘popEpi’ ...
** package ‘popEpi’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (popEpi)
* installing *source* package ‘misty’ ...
** package ‘misty’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (misty)
* installing *source* package ‘evgam’ ...
** package ‘evgam’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp10ULeU/R.INSTALLb05b2feb5bbf/evgam/src'
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c aldC.cpp -o aldC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c exiC.cpp -o exiC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c expC.cpp -o expC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c extras.cpp -o extras.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gaussC.cpp -o gaussC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gevC.cpp -o gevC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gevaggC.cpp -o gevaggC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gevcC.cpp -o gevcC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gpdC.cpp -o gpdC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gpdcC.cpp -o gpdcC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gradHess.cpp -o gradHess.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ppC.cpp -o ppC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ppexiC.cpp -o ppexiC.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c weibC.cpp -o weibC.o
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o evgam.so RcppExports.o aldC.o exiC.o expC.o extras.o gaussC.o gevC.o gevaggC.o gevcC.o gpdC.o gpdcC.o gradHess.o ppC.o ppexiC.o weibC.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp10ULeU/R.INSTALLb05b2feb5bbf/evgam/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-evgam/00new/evgam/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (evgam)
begin installing package ‘ftsa’
* installing *source* package ‘ftsa’ ...
** package ‘ftsa’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ftsa)
begin installing package ‘demography’
* installing *source* package ‘demography’ ...
** package ‘demography’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (demography)
* installing *source* package ‘highs’ ...
** package ‘highs’ successfully unpacked and MD5 sums checked
** using staged installation
Use 'configure'

CMAKE VERSION: 'cmake version 3.30.3'
arch: 'x86_64'
R_ARCH: ''
CC: 'gcc-14'
CXX: 'g++-14 -std=gnu++17'
CXX11: 'g++-14'

-- The CXX compiler identification is GNU 14.2.0
-- The C compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-14 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-14 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- IPO / LTO enabled
-- Performing Test HIGHS_HAVE_MM_PAUSE
-- Performing Test HIGHS_HAVE_MM_PAUSE - Success
-- Performing Test HIGHS_HAVE_BUILTIN_CLZ
-- Performing Test HIGHS_HAVE_BUILTIN_CLZ - Success
-- Performing Test flag_supported
-- Performing Test flag_supported - Success
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/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/ipm/basiclu/lu_file.c: In function ‘lu_file_reappend’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/ipm/basiclu/lu_file.c:80:24: warning: variable ‘room’ set but not used [-Wunused-but-set-variable]
   80 |     lu_int fmem, used, room, ibeg, iend, pos;
      |                        ^~~~
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/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_any’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:186:24: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  186 |     lu_int grow, room, found, position;
      |                        ^~~~~
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_small’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:478:24: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  478 |     lu_int grow, room, found, position, col_number;
      |                        ^~~~~
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_singleton_col’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:871:42: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  871 |     lu_int j, pos, rpos, put, nz, where, found;
      |                                          ^~~~~
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/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessBounds’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:359:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized]
  359 |   if (from_k > to_k) return HighsStatus::kOk;
      |   ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:357:12: note: ‘to_k’ was declared here
  357 |   HighsInt to_k;
      |            ^
In function ‘changeBounds’,
    inlined from ‘changeLpColBounds’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1608:15,
    inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:662:20:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1628:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized]
 1628 |   if (from_k > to_k) return;
      |   ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘changeColBoundsInterface’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1626:12: note: ‘to_k’ was declared here
 1626 |   HighsInt to_k;
      |            ^
In member function ‘setNonbasicStatusInterface’,
    inlined from ‘setNonbasicStatusInterface’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:833:6,
    inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:666:29:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:863:31: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized]
  863 |   for (HighsInt k = from_k; k <= to_k; k++) {
      |                               ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp: In member function ‘changeColBoundsInterface’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:843:12: note: ‘to_k’ was declared here
  843 |   HighsInt to_k;
      |            ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessCosts.constprop’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:288:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized]
  288 |   if (from_k > to_k) return return_status;
      |   ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:286:12: note: ‘to_k’ was declared here
  286 |   HighsInt to_k;
      |            ^
In function ‘changeLpCosts’,
    inlined from ‘changeCostsInterface’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:621:16,
    inlined from ‘changeColsCost’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/Highs.cpp:2081:49,
    inlined from ‘feasibilityPump’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/mip/HighsPrimalHeuristics.cpp:1080:41:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1577:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized]
 1577 |   if (from_k > to_k) return;
      |   ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘feasibilityPump’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1575:12: note: ‘to_k’ was declared here
 1575 |   HighsInt to_k;
      |            ^
In function ‘deleteScale’,
    inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:365:16,
    inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22,
    inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1460:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized]
 1460 |   if (from_k > to_k) return;
      |   ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1458:12: note: ‘to_k’ was declared here
 1458 |   HighsInt to_k;
      |            ^
In function ‘deleteRowsFromLpVectors’,
    inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1407:26,
    inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15,
    inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22,
    inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1420:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized]
 1420 |   if (from_k > to_k) return;
      |   ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1416:12: note: ‘to_k’ was declared here
 1416 |   HighsInt to_k;
      |            ^
In member function ‘deleteRows’,
    inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1408:26,
    inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15,
    inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22,
    inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:605:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized]
  605 |   if (from_k > to_k) return;
      |   ^
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp: In member function ‘removeCuts’:
/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:603:12: note: ‘to_k’ was declared here
  603 |   HighsInt to_k;
      |            ^
make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/build'
[100%] Built target highs
make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/build'
Install the project...
-- Install configuration: "RELEASE"
-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/bin/highs
-- Set non-toolchain portion of runtime path of "/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/bin/highs" to "/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/lib"
-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/filereaderlp/builder.hpp
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/filereaderlp/reader.hpp
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/io/HighsIO.h
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/presolve/HighsSymmetry.h
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/test/DevKkt.h
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HFactorConst.h
-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HFactorDebug.h
-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HighsCDouble.h
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HighsDisjointSets.h
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HighsHashTree.h
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HighsIntegers.h
-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HighsLinearSumBounds.h
-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HighsMatrixPic.h
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HighsRbTree.h
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-- Installing: /home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs/util/HighsSplay.h
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make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/inst/HiGHS/build'
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src'
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c highs_interface.cpp -o highs_interface.o
highs_interface.cpp: In function ‘int32_t solver_get_sense(SEXP)’:
highs_interface.cpp:259:17: warning: unused variable ‘status’ [-Wunused-variable]
  259 |     HighsStatus status = highs->getObjectiveSense(sense);
      |                 ^~~~~~
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o highs.so RcppExports.o highs_interface.o -L/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/lib -L/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src/highslib/lib64 -lhighs -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGUeALd/R.INSTALLb05dd1f3540b2/highs/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-highs/00new/highs/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (highs)

checking Epi_2.56.tar.gz ...
checking bshazard_1.2.tar.gz ...
checking codeCollection_0.1.3.tar.gz ...
checking cohorttools_0.1.6.tar.gz ...
checking dani_0.1-1.tar.gz ...
checking flexrsurv_2.0.18.tar.gz ...
checking Greg_2.0.2.tar.gz ...
checking MCARtest_1.2.1.tar.gz ...
checking popEpi_0.4.12.tar.gz ...
checking pubh_1.3.7.tar.gz ...
checking biostat3_0.2.1.tar.gz ...
checking catregs_1.2.2.tar.gz ...
checking fmsb_0.7.6.tar.gz ...
checking mable_4.1.0.tar.gz ...
checking metafor_4.6-0.tar.gz ...
checking pander_0.6.5.tar.gz ...
checking shinyPredict_0.1.1.tar.gz ...

Depends:
Package: Epi
  Depends: R (>= 3.5.0), utils
  Imports: cmprsk, etm, splines, MASS, survival, plyr, dplyr, Matrix,
    numDeriv, data.table, zoo, mgcv, magrittr

Timings:
       user system elapsed
Epi 248.604  12.92 264.335

Results:
Check status summary:
                  ERROR NOTE OK
  Source packages     0    0  1
  Reverse depends     1    5 10

Check results summary:
Epi ... OK
rdepends_biostat3 ... OK
rdepends_bshazard ... OK
rdepends_catregs ... OK
rdepends_codeCollection ... OK
rdepends_cohorttools ... NOTE
* checking Rd cross-references ... NOTE
rdepends_dani ... OK
rdepends_flexrsurv ... OK
rdepends_fmsb ... OK
rdepends_Greg ... NOTE
* checking Rd cross-references ... NOTE
rdepends_mable ... OK
rdepends_MCARtest ... OK
rdepends_metafor ... NOTE
* checking Rd cross-references ... NOTE
rdepends_pander ... NOTE
* checking Rd files ... [1s/1s] NOTE
rdepends_popEpi ... NOTE
* checking Rd cross-references ... NOTE
rdepends_pubh ... ERROR
* checking examples ... [4s/4s] ERROR
* checking re-building of vignette outputs ... [16s/17s] ERROR
rdepends_shinyPredict ... OK

Check results changes:
Package: pubh
Check: examples
New result: ERROR

Package: pubh
Check: re-building of vignette outputs
New result: ERROR