downloading reverse dependencies ... downloading bshazard_1.2.tar.gz ... ok downloading codeCollection_0.1.3.tar.gz ... ok downloading cohorttools_0.1.6.tar.gz ... ok downloading dani_0.1-1.tar.gz ... ok downloading flexrsurv_2.0.18.tar.gz ... ok downloading Greg_2.0.2.tar.gz ... ok downloading MCARtest_1.2.1.tar.gz ... ok downloading popEpi_0.4.12.tar.gz ... ok downloading pubh_1.3.7.tar.gz ... ok downloading biostat3_0.2.1.tar.gz ... ok downloading catregs_1.2.2.tar.gz ... ok downloading fmsb_0.7.6.tar.gz ... ok downloading metafor_4.6-0.tar.gz ... ok downloading pander_0.6.5.tar.gz ... ok downloading shinyPredict_0.1.1.tar.gz ... ok installing dependencies ‘bshazard’, ‘cardx’, ‘demography’, ‘descr’, ‘easystats’, ‘Epi’, ‘estmeansd’, ‘Gmisc’, ‘highs’, ‘ISwR’, ‘metaBLUE’, ‘mexhaz’, ‘missMethods’, ‘misty’, ‘moonBook’, ‘orthogonalsplinebasis’, ‘popEpi’, ‘relsurv’, ‘report’, ‘sjPlot’, ‘sylly.en’, ‘wildmeta’ also installing the dependencies ‘pdfCluster’, ‘evgam’, ‘ROOPSD’, ‘ftsa’, ‘HMDHFDplus’, ‘pammtools’, ‘sjstats’, ‘robumeta’ begin installing package ‘pdfCluster’ begin installing package ‘evgam’ begin installing package ‘ROOPSD’ begin installing package ‘HMDHFDplus’ begin installing package ‘pammtools’ begin installing package ‘sjstats’ begin installing package ‘robumeta’ begin installing package ‘orthogonalsplinebasis’ begin installing package ‘mexhaz’ begin installing package ‘Gmisc’ begin installing package ‘highs’ begin installing package ‘misty’ begin installing package ‘missMethods’ begin installing package ‘moonBook’ begin installing package ‘cardx’ begin installing package ‘ISwR’ begin installing package ‘report’ begin installing package ‘metaBLUE’ begin installing package ‘sylly.en’ begin installing package ‘descr’ begin installing package ‘Epi’ * installing *source* package ‘sylly.en’ ... ** package ‘sylly.en’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sylly.en) * installing *source* package ‘ISwR’ ... ** package ‘ISwR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ISwR) * installing *source* package ‘robumeta’ ... ** package ‘robumeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robumeta) begin installing package ‘wildmeta’ * installing *source* package ‘orthogonalsplinebasis’ ... ** package ‘orthogonalsplinebasis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘integrate’ in package ‘orthogonalsplinebasis’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orthogonalsplinebasis) * installing *source* package ‘missMethods’ ... ** package ‘missMethods’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missMethods) * installing *source* package ‘descr’ ... ** package ‘descr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUm1bug/R.INSTALL31cbbf5bea5a16/descr/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c descr.c -o descr.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o descr.so descr.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUm1bug/R.INSTALL31cbbf5bea5a16/descr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-descr/00new/descr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (descr) * installing *source* package ‘sjstats’ ... ** package ‘sjstats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sjstats) begin installing package ‘sjPlot’ * installing *source* package ‘metaBLUE’ ... ** package ‘metaBLUE’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metaBLUE) begin installing package ‘estmeansd’ * installing *source* package ‘moonBook’ ... ** package ‘moonBook’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (moonBook) * installing *source* package ‘HMDHFDplus’ ... ** package ‘HMDHFDplus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HMDHFDplus) * installing *source* package ‘cardx’ ... ** package ‘cardx’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cardx) * installing *source* package ‘pdfCluster’ ... ** package ‘pdfCluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGLAf42/R.INSTALL31cb7f4ad7bf3b/pdfCluster/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kepdf.c -o kepdf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c macon.c -o macon.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nc.c -o nc.o nc.c:17:27: warning: ‘CEntries’ defined but not used [-Wunused-const-variable=] 17 | static const R_CMethodDef CEntries[] = { | ^~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pdfCluster_init.c -o pdfCluster_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o pdfCluster.so kepdf.o macon.o nc.o pdfCluster_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGLAf42/R.INSTALL31cb7f4ad7bf3b/pdfCluster/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pdfCluster/00new/pdfCluster/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pdfCluster) * installing *source* package ‘estmeansd’ ... ** package ‘estmeansd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (estmeansd) * installing *source* package ‘ROOPSD’ ... ** package ‘ROOPSD’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROOPSD) * installing *source* package ‘wildmeta’ ... ** package ‘wildmeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wildmeta) * installing *source* package ‘report’ ... ** package ‘report’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (report) begin installing package ‘easystats’ * installing *source* package ‘pammtools’ ... ** package ‘pammtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pammtools) begin installing package ‘relsurv’ * installing *source* package ‘easystats’ ... ** package ‘easystats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (easystats) * installing *source* package ‘Epi’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVobI35/R.INSTALL31cbc12f4972e7/Epi/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chinv2.c -o chinv2.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cholesky2.c -o cholesky2.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chsolve2.c -o chsolve2.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clogit.c -o clogit.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Epi.so chinv2.o cholesky2.o chsolve2.o clogit.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVobI35/R.INSTALL31cbc12f4972e7/Epi/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Epi/00new/Epi/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Epi) begin installing package ‘popEpi’ begin installing package ‘bshazard’ * installing *source* package ‘sjPlot’ ... ** package ‘sjPlot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sjPlot) * installing *source* package ‘mexhaz’ ... ** package ‘mexhaz’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRZoR1V/R.INSTALL31cb9460b7827a/mexhaz/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs0R.c -o DeltaBs0R.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs1R.c -o DeltaBs1R.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs23R.c -o DeltaBs23R.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaNsR.c -o DeltaNsR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaWeibR.c -o DeltaWeibR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FrailtyAdapt.c -o FrailtyAdapt.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FrailtyAdaptL.c -o FrailtyAdaptL.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GaussProcLIN.c -o GaussProcLIN.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GaussProcNPH.c -o GaussProcNPH.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsL.c -o HGHAggr_BsL.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsLx.c -o HGHAggr_BsLx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsR.c -o HGHAggr_BsR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsRx.c -o HGHAggr_BsRx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsL.c -o HGHAggr_NsL.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsLx.c -o HGHAggr_NsLx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsR.c -o HGHAggr_NsR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsRx.c -o HGHAggr_NsRx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_Pois.c -o HGHAggr_Pois.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwL.c -o HGHAggr_PwL.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwLx.c -o HGHAggr_PwLx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwR.c -o HGHAggr_PwR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwRx.c -o HGHAggr_PwRx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbL.c -o HGHAggr_WbL.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbLx.c -o HGHAggr_WbLx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbR.c -o HGHAggr_WbR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbRx.c -o HGHAggr_WbRx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_BsR.c -o HGH_BsR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_BsRx.c -o HGH_BsRx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_NsR.c -o HGH_NsR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_NsRx.c -o HGH_NsRx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_PwR.c -o HGH_PwR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_PwRx.c -o HGH_PwRx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_WbR.c -o HGH_WbR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_WbRx.c -o HGH_WbRx.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0C.c -o HazardBs0C.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0L.c -o HazardBs0L.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0R.c -o HazardBs0R.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1C.c -o HazardBs1C.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1L.c -o HazardBs1L.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1R.c -o HazardBs1R.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23C.c -o HazardBs23C.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23L.c -o HazardBs23L.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23R.c -o HazardBs23R.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsC.c -o HazardNsC.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsL.c -o HazardNsL.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsR.c -o HazardNsR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibC.c -o HazardWeibC.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibL.c -o HazardWeibL.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibR.c -o HazardWeibR.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c OptFunc.c -o OptFunc.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SplineFunc.c -o SplineFunc.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mexhaz.so DeltaBs0R.o DeltaBs1R.o DeltaBs23R.o DeltaNsR.o DeltaWeibR.o FrailtyAdapt.o FrailtyAdaptL.o GaussProcLIN.o GaussProcNPH.o HGHAggr_BsL.o HGHAggr_BsLx.o HGHAggr_BsR.o HGHAggr_BsRx.o HGHAggr_NsL.o HGHAggr_NsLx.o HGHAggr_NsR.o HGHAggr_NsRx.o HGHAggr_Pois.o HGHAggr_PwL.o HGHAggr_PwLx.o HGHAggr_PwR.o HGHAggr_PwRx.o HGHAggr_WbL.o HGHAggr_WbLx.o HGHAggr_WbR.o HGHAggr_WbRx.o HGH_BsR.o HGH_BsRx.o HGH_NsR.o HGH_NsRx.o HGH_PwR.o HGH_PwRx.o HGH_WbR.o HGH_WbRx.o HazardBs0C.o HazardBs0L.o HazardBs0R.o HazardBs1C.o HazardBs1L.o HazardBs1R.o HazardBs23C.o HazardBs23L.o HazardBs23R.o HazardNsC.o HazardNsL.o HazardNsR.o HazardWeibC.o HazardWeibL.o HazardWeibR.o OptFunc.o SplineFunc.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRZoR1V/R.INSTALL31cb9460b7827a/mexhaz/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mexhaz/00new/mexhaz/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mexhaz) * installing *source* package ‘Gmisc’ ... ** package ‘Gmisc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKfF5u7/R.INSTALL31cba8304e3df8/Gmisc/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gmisc_lines.cpp -o Gmisc_lines.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bezierArrowFn.cpp -o bezierArrowFn.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gnrlBezier.cpp -o gnrlBezier.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Gmisc.so Gmisc_lines.o RcppExports.o bezierArrowFn.o gnrlBezier.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKfF5u7/R.INSTALL31cba8304e3df8/Gmisc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Gmisc/00new/Gmisc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Gmisc) * installing *source* package ‘bshazard’ ... ** package ‘bshazard’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bshazard) * installing *source* package ‘relsurv’ ... ** package ‘relsurv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNmsGz2/R.INSTALL31d3852a982386/relsurv/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cmpfast.c -o cmpfast.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmatrix.c -o dmatrix.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c exps.c -o exps.o exps.c: In function ‘expc’: exps.c:78:65: warning: "/*" within comment [-Wcomment] 78 | /*si2 = (double *)ALLOC(n, sizeof(double)); /*Si for each individual - a je to prav???*/ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastp.c -o netfastp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastpinter.c -o netfastpinter.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastpinter2.c -o netfastpinter2.o netfastpinter2.c: In function ‘netfastpinter2’: netfastpinter2.c:53:13: warning: variable ‘et2’ set but not used [-Wunused-but-set-variable] 53 | et2, | ^~~ netfastpinter2.c:46:13: warning: unused variable ‘nprec’ [-Wunused-variable] 46 | nprec; | ^~~~~ netfastpinter2.c:278:42: warning: ‘sisum’ may be used uninitialized [-Wmaybe-uninitialized] 278 | yidlisi[j]=hazard/sisum; //the total hazard divided by the si at the end of the crude interval | ~~~~~~^~~~~~ netfastpinter2.c:61:13: note: ‘sisum’ was declared here 61 | sisum, | ^~~~~ netfastpinter2.c:279:44: warning: ‘sisumtt’ may be used uninitialized [-Wmaybe-uninitialized] 279 | yidlisitt[j]=hazard/sisumtt; // the total hazard divided by the si at the beginning of the crude interval | ~~~~~~^~~~~~~~ netfastpinter2.c:62:13: note: ‘sisumtt’ was declared here 62 | sisumtt, | ^~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netwei.c -o netwei.o netwei.c: In function ‘netwei’: netwei.c:195:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 195 | for (k=0; k to_k) return HighsStatus::kOk; | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:357:12: note: ‘to_k’ was declared here 357 | HighsInt to_k; | ^ In function ‘changeBounds’, inlined from ‘changeLpColBounds’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1608:15, inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:662:20: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1628:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1628 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘changeColBoundsInterface’: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1626:12: note: ‘to_k’ was declared here 1626 | HighsInt to_k; | ^ In member function ‘setNonbasicStatusInterface’, inlined from ‘setNonbasicStatusInterface’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:833:6, inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:666:29: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:863:31: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 863 | for (HighsInt k = from_k; k <= to_k; k++) { | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp: In member function ‘changeColBoundsInterface’: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:843:12: note: ‘to_k’ was declared here 843 | HighsInt to_k; | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessCosts.constprop’: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:288:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 288 | if (from_k > to_k) return return_status; | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:286:12: note: ‘to_k’ was declared here 286 | HighsInt to_k; | ^ In function ‘changeLpCosts’, inlined from ‘changeCostsInterface’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:621:16, inlined from ‘changeColsCost’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/Highs.cpp:2081:49, inlined from ‘feasibilityPump’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/mip/HighsPrimalHeuristics.cpp:1080:41: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1577:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1577 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘feasibilityPump’: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1575:12: note: ‘to_k’ was declared here 1575 | HighsInt to_k; | ^ In function ‘deleteScale’, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:365:16, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1460:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1460 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1458:12: note: ‘to_k’ was declared here 1458 | HighsInt to_k; | ^ In function ‘deleteRowsFromLpVectors’, inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1407:26, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1420:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1420 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1416:12: note: ‘to_k’ was declared here 1416 | HighsInt to_k; | ^ In member function ‘deleteRows’, inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1408:26, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:605:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 605 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:603:12: note: ‘to_k’ was declared here 603 | HighsInt to_k; | ^ make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/build' [100%] Built target highs make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/build' Install the project... -- Install configuration: "RELEASE" -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/bin/highs -- Set non-toolchain portion of runtime path of "/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/bin/highs" to "/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/lib" -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/filereaderlp/builder.hpp -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/filereaderlp/model.hpp -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/filereaderlp/reader.hpp -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/io/Filereader.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/io/FilereaderLp.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/io/FilereaderEms.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/io/FilereaderMps.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/io/HMpsFF.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/io/HMPSIO.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/io/HighsIO.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/io/LoadOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HConst.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HStruct.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsAnalysis.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsInfo.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsInfoDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsLp.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsLpSolverObject.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsLpUtils.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsModelUtils.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsRanging.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsRuntimeOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsSolution.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsSolutionDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsSolve.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/lp_data/HighsStatus.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsCliqueTable.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsCutGeneration.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsConflictPool.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsCutPool.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsDebugSol.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsDomainChange.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsDomain.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsDynamicRowMatrix.h -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs/mip/HighsGFkSolve.h -- Installing: 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/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/lib/cmake/highs/highs-config.cmake -- Installing: /home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/lib/pkgconfig/highs.pc make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/inst/HiGHS/build' ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c highs_interface.cpp -o highs_interface.o highs_interface.cpp: In function ‘int32_t solver_get_sense(SEXP)’: highs_interface.cpp:259:17: warning: unused variable ‘status’ [-Wunused-variable] 259 | HighsStatus status = highs->getObjectiveSense(sense); | ^~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o highs.so RcppExports.o highs_interface.o -L/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/lib -L/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src/highslib/lib64 -lhighs -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUvA5aB/R.INSTALL31cbaa4d9591e1/highs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-highs/00new/highs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highs) checking Epi_2.55.tar.gz ... checking bshazard_1.2.tar.gz ... checking codeCollection_0.1.3.tar.gz ... checking cohorttools_0.1.6.tar.gz ... checking flexrsurv_2.0.18.tar.gz ... checking dani_0.1-1.tar.gz ... checking Greg_2.0.2.tar.gz ... checking MCARtest_1.2.1.tar.gz ... checking popEpi_0.4.12.tar.gz ... checking pubh_1.3.7.tar.gz ... checking biostat3_0.2.1.tar.gz ... checking catregs_1.2.2.tar.gz ... checking fmsb_0.7.6.tar.gz ... checking metafor_4.6-0.tar.gz ... checking pander_0.6.5.tar.gz ... checking shinyPredict_0.1.1.tar.gz ... Depends: Package: Epi Depends: R (>= 3.5.0), utils Imports: cmprsk, etm, splines, MASS, survival, plyr, dplyr, Matrix, numDeriv, data.table, zoo, mgcv, magrittr Timings: user system elapsed Epi 246.218 13.893 263.464 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 6 9 Check results summary: Epi ... OK rdepends_biostat3 ... OK rdepends_bshazard ... OK rdepends_catregs ... OK rdepends_codeCollection ... OK rdepends_cohorttools ... NOTE * checking Rd cross-references ... NOTE rdepends_dani ... OK rdepends_flexrsurv ... OK rdepends_fmsb ... OK rdepends_Greg ... NOTE * checking Rd cross-references ... NOTE rdepends_MCARtest ... OK rdepends_metafor ... NOTE * checking Rd cross-references ... NOTE rdepends_pander ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_popEpi ... NOTE * checking Rd cross-references ... NOTE rdepends_pubh ... OK rdepends_shinyPredict ... NOTE * checking LazyData ... NOTE Check results changes: Package: biostat3 Check: whether package can be installed Old result: ERROR New result: OK Package: bshazard Check: whether package can be installed Old result: ERROR New result: OK Package: catregs Check: whether package can be installed Old result: ERROR New result: OK Package: codeCollection Check: whether package can be installed Old result: ERROR New result: OK Package: cohorttools Check: Rd cross-references New result: NOTE Package: cohorttools Check: whether package can be installed Old result: ERROR New result: OK Package: dani Check: whether package can be installed Old result: ERROR New result: OK Package: flexrsurv Check: whether package can be installed Old result: ERROR New result: OK Package: fmsb Check: whether package can be installed Old result: ERROR New result: OK Package: Greg Check: Rd cross-references New result: NOTE Package: Greg Check: whether package can be installed Old result: ERROR New result: OK Package: MCARtest Check: whether package can be installed Old result: ERROR New result: OK Package: metafor Check: Rd cross-references New result: NOTE Package: metafor Check: whether package can be installed Old result: ERROR New result: OK Package: pander Check: Rd files New result: NOTE Package: pander Check: whether package can be installed Old result: ERROR New result: OK Package: popEpi Check: Rd cross-references New result: NOTE Package: popEpi Check: whether package can be installed Old result: ERROR New result: OK Package: pubh Check: whether package can be installed Old result: ERROR New result: OK Package: shinyPredict Check: LazyData New result: NOTE Package: shinyPredict Check: whether package can be installed Old result: ERROR New result: OK