downloading reverse dependencies ... downloading bshazard_1.1.tar.gz ... ok downloading codeCollection_0.1.3.tar.gz ... ok downloading cohorttools_0.1.6.tar.gz ... ok downloading dani_0.1-1.tar.gz ... ok downloading flexrsurv_2.0.18.tar.gz ... ok downloading Greg_2.0.2.tar.gz ... ok downloading MCARtest_1.2.1.tar.gz ... ok downloading popEpi_0.4.11.tar.gz ... ok downloading pubh_1.3.2.tar.gz ... ok downloading biostat3_0.1.9.tar.gz ... ok downloading fmsb_0.7.6.tar.gz ... ok downloading metafor_4.6-0.tar.gz ... ok downloading pander_0.6.5.tar.gz ... ok downloading shinyPredict_0.1.1.tar.gz ... ok installing dependencies ‘bshazard’, ‘demography’, ‘descr’, ‘Epi’, ‘estmeansd’, ‘Gmisc’, ‘highs’, ‘ISwR’, ‘metaBLUE’, ‘mexhaz’, ‘missMethods’, ‘misty’, ‘moonBook’, ‘orthogonalsplinebasis’, ‘popEpi’, ‘Rcsdp’, ‘relsurv’, ‘report’, ‘sjPlot’, ‘sylly’, ‘sylly.en’, ‘wildmeta’ also installing the dependencies ‘pdfCluster’, ‘evgam’, ‘ROOPSD’, ‘ftsa’, ‘HMDHFDplus’, ‘pammtools’, ‘robumeta’ begin installing package ‘pdfCluster’ begin installing package ‘evgam’ begin installing package ‘ROOPSD’ begin installing package ‘HMDHFDplus’ begin installing package ‘pammtools’ begin installing package ‘robumeta’ begin installing package ‘orthogonalsplinebasis’ begin installing package ‘mexhaz’ begin installing package ‘Gmisc’ begin installing package ‘highs’ begin installing package ‘Rcsdp’ begin installing package ‘misty’ begin installing package ‘missMethods’ begin installing package ‘moonBook’ begin installing package ‘ISwR’ begin installing package ‘report’ begin installing package ‘sjPlot’ begin installing package ‘metaBLUE’ begin installing package ‘sylly’ begin installing package ‘descr’ begin installing package ‘Epi’ * installing *source* package ‘ISwR’ ... ** package ‘ISwR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ISwR) * installing *source* package ‘robumeta’ ... ** package ‘robumeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robumeta) begin installing package ‘wildmeta’ * installing *source* package ‘orthogonalsplinebasis’ ... ** package ‘orthogonalsplinebasis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘integrate’ in package ‘orthogonalsplinebasis’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orthogonalsplinebasis) * installing *source* package ‘missMethods’ ... ** package ‘missMethods’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missMethods) * installing *source* package ‘descr’ ... ** package ‘descr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp41yxLN/R.INSTALL145dba3057a8ac/descr/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c descr.c -o descr.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o descr.so descr.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp41yxLN/R.INSTALL145dba3057a8ac/descr/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-descr/00new/descr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (descr) * installing *source* package ‘sylly’ ... ** package ‘sylly’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sylly) begin installing package ‘sylly.en’ * installing *source* package ‘metaBLUE’ ... ** package ‘metaBLUE’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metaBLUE) begin installing package ‘estmeansd’ * installing *source* package ‘HMDHFDplus’ ... ** package ‘HMDHFDplus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HMDHFDplus) * installing *source* package ‘moonBook’ ... ** package ‘moonBook’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (moonBook) * installing *source* package ‘sylly.en’ ... ** package ‘sylly.en’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sylly.en) * installing *source* package ‘pdfCluster’ ... ** package ‘pdfCluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIoU3kY/R.INSTALL145d763a9244dc/pdfCluster/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kepdf.c -o kepdf.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c macon.c -o macon.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nc.c -o nc.o nc.c:17:27: warning: ‘CEntries’ defined but not used [-Wunused-const-variable=] 17 | static const R_CMethodDef CEntries[] = { | ^~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pdfCluster_init.c -o pdfCluster_init.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o pdfCluster.so kepdf.o macon.o nc.o pdfCluster_init.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIoU3kY/R.INSTALL145d763a9244dc/pdfCluster/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pdfCluster/00new/pdfCluster/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pdfCluster) * installing *source* package ‘estmeansd’ ... ** package ‘estmeansd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (estmeansd) * installing *source* package ‘ROOPSD’ ... ** package ‘ROOPSD’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROOPSD) * installing *source* package ‘wildmeta’ ... ** package ‘wildmeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wildmeta) * installing *source* package ‘Rcsdp’ ... ** package ‘Rcsdp’ successfully unpacked and MD5 sums checked ** using staged installation Using bundled CSDP checking for gcc... gcc-13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-13 accepts -g... yes checking for gcc-13 option to enable C11 features... none needed checking how to run the C preprocessor... gcc-13 -E configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkZwt6x/R.INSTALL145da01636308a/Rcsdp/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rcsdp.c -o Rcsdp.o Rcsdp.c: In function ‘csdp’: Rcsdp.c:37:47: warning: variable ‘blocksizes’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~~~~ Rcsdp.c:37:34: warning: variable ‘blocktypes’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~~~~ Rcsdp.c:37:10: warning: variable ‘nblocks’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~ Rcsdp.c: In function ‘writesdpa’: Rcsdp.c:230:10: warning: variable ‘nblocks’ set but not used [-Wunused-but-set-variable] 230 | int n, nblocks, nconstraints, status; | ^~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c convert.c -o convert.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testing.c -o testing.o (cd Csdp/lib && \ (make libsdp.a CC="gcc-13 " CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include" AR="ar" RANLIB="ranlib") && \ touch Csdp.ts) make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpkZwt6x/R.INSTALL145da01636308a/Rcsdp/src/Csdp/lib' gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o readprob.o readprob.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o sdp.o sdp.c sdp.c: In function ‘sdp’: sdp.c:748: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 748 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k,workvec8) private(i,j) | sdp.c:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(O,k,ldam) | sdp.c:142:7: warning: variable ‘lastimprove’ set but not used [-Wunused-but-set-variable] 142 | int lastimprove=0; | ^~~~~~~~~~~ sdp.c:131:10: warning: variable ‘newdobj’ set but not used [-Wunused-but-set-variable] 131 | double newdobj; | ^~~~~~~ sdp.c:130:10: warning: variable ‘newpobj’ set but not used [-Wunused-but-set-variable] 130 | double newpobj; | ^~~~~~~ sdp.c:129:10: warning: variable ‘oldmaxrelinfeas’ set but not used [-Wunused-but-set-variable] 129 | double oldmaxrelinfeas=1.0e100; | ^~~~~~~~~~~~~~~ sdp.c:112:10: warning: variable ‘oldmu’ set but not used [-Wunused-but-set-variable] 112 | double oldmu; | ^~~~~ gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o op_o.o op_o.c op_o.c: In function ‘op_o’: op_o.c:124: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 124 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k) private(j,i) | op_o.c:136: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 136 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(k,constraints,byblocks,Zi,X,O,work1, work2, work, ldam) private(j, ii, jj, blocksize, p, q, r, s, ptri, ptrj, blocknum, contrib, Ziblk, Xblk, workblk, work2blk, enti, entj, scale1, scale2, thread_num) | op_o.c:432: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 432 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k) private(j,i) | gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o psd_feas.o psd_feas.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o op_a.o op_a.c op_a.c: In function ‘op_a’: op_a.c:23: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 23 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,contrib,ptr,blk,nume,vec,j,p,mat,ent,q) shared(k,constraints,result,X) | gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o op_at.o op_at.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o Fnorm.o Fnorm.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o calc_pobj.o calc_pobj.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o calc_dobj.o calc_dobj.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o trace_prod.o trace_prod.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o zero_mat.o zero_mat.c zero_mat.c: In function ‘zero_mat’: zero_mat.c:32: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 32 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(A,blk) private(j,i) | gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o mat_mult.o mat_mult.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o sym_mat.o sym_mat.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o copy_mat.o copy_mat.c copy_mat.c: In function ‘copy_mat’: copy_mat.c:27: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 27 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q) | gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o addscaledmat.o addscaledmat.c addscaledmat.c: In function ‘addscaledmat’: addscaledmat.c:30: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 30 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(A,B,C,scale,blk) | gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o user_exit.o user_exit.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o make_i.o make_i.c make_i.c: In function ‘make_i’: make_i.c:24: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 24 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,p,A) | gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o allocmat.o allocmat.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o initsoln.o initsoln.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o initparams.o initparams.c initparams.c: In function ‘initparams’: initparams.c:33:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 33 | int ret = fscanf(paramfile,"%*[^=]%*c%lf",&(params->axtol)); | ^~~ gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o add_mat.o add_mat.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o writesol.o writesol.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o readsol.o readsol.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o easysdp.o easysdp.c easysdp.c: In function ‘easy_sdp’: easysdp.c:61:7: warning: variable ‘blk’ set but not used [-Wunused-but-set-variable] 61 | int blk; | ^~~ gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o writeprob.o writeprob.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o solvesys.o solvesys.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o makefill.o makefill.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o mat_multsp.o mat_multsp.c mat_multsp.c: In function ‘mat_multspb’: mat_multsp.c:171: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 171 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,C,scale2) | mat_multsp.c:57:7: warning: unused variable ‘thread_num’ [-Wunused-variable] 57 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:56:7: warning: unused variable ‘total_threads’ [-Wunused-variable] 56 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c: In function ‘mat_multspa’: mat_multsp.c:410: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 410 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2) | mat_multsp.c:295:7: warning: unused variable ‘thread_num’ [-Wunused-variable] 295 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:294:7: warning: unused variable ‘total_threads’ [-Wunused-variable] 294 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c: In function ‘mat_multspc’: mat_multsp.c:595: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 595 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,ii,p,q,temp) shared(ptr,A,B,C,blk,blksize,scale1) | mat_multsp.c:636: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 636 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2) | gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o norms.o norms.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o linesearch.o linesearch.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o matvec.o matvec.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o chol.o chol.c chol.c: In function ‘chol_inv’: chol.c:150:10: warning: variable ‘scale’ set but not used [-Wunused-but-set-variable] 150 | double scale; | ^~~~~ gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o qreig.o qreig.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o tweakgap.o tweakgap.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o freeprob.o freeprob.c gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o packed.o packed.c packed.c: In function ‘store_packed’: packed.c:30: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 30 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n) | packed.c: In function ‘store_unpacked’: packed.c:63: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 63 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n) | packed.c: In function ‘triu’: packed.c:188: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 188 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(A,n) | gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o sortentries.o sortentries.c ar cr libsdp.a readprob.o sdp.o op_o.o psd_feas.o op_a.o op_at.o Fnorm.o calc_pobj.o calc_dobj.o trace_prod.o zero_mat.o mat_mult.o sym_mat.o copy_mat.o addscaledmat.o user_exit.o make_i.o allocmat.o initsoln.o initparams.o add_mat.o writesol.o readsol.o easysdp.o writeprob.o solvesys.o makefill.o mat_multsp.o norms.o linesearch.o matvec.o chol.o qreig.o tweakgap.o freeprob.o packed.o sortentries.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpkZwt6x/R.INSTALL145da01636308a/Rcsdp/src/Csdp/lib' gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o Rcsdp.so Rcsdp.o convert.o testing.o -LCsdp/lib -lsdp -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -lm -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkZwt6x/R.INSTALL145da01636308a/Rcsdp/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-Rcsdp/00new/Rcsdp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcsdp) * installing *source* package ‘report’ ... ** package ‘report’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (report) * installing *source* package ‘pammtools’ ... ** package ‘pammtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pammtools) begin installing package ‘relsurv’ * installing *source* package ‘Epi’ ... ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz5uPRf/R.INSTALL145db86edf192d/Epi/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chinv2.c -o chinv2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cholesky2.c -o cholesky2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chsolve2.c -o chsolve2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clogit.c -o clogit.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o Epi.so chinv2.o cholesky2.o chsolve2.o clogit.o init.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz5uPRf/R.INSTALL145db86edf192d/Epi/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-Epi/00new/Epi/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Epi) begin installing package ‘popEpi’ begin installing package ‘bshazard’ * installing *source* package ‘sjPlot’ ... ** package ‘sjPlot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sjPlot) * installing *source* package ‘mexhaz’ ... ** package ‘mexhaz’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeiaI0F/R.INSTALL145d96372d63a2/mexhaz/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs0R.c -o DeltaBs0R.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs1R.c -o DeltaBs1R.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaBs23R.c -o DeltaBs23R.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaNsR.c -o DeltaNsR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DeltaWeibR.c -o DeltaWeibR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FrailtyAdapt.c -o FrailtyAdapt.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FrailtyAdaptL.c -o FrailtyAdaptL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GaussProcLIN.c -o GaussProcLIN.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GaussProcNPH.c -o GaussProcNPH.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsL.c -o HGHAggr_BsL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsLx.c -o HGHAggr_BsLx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsR.c -o HGHAggr_BsR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_BsRx.c -o HGHAggr_BsRx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsL.c -o HGHAggr_NsL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsLx.c -o HGHAggr_NsLx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsR.c -o HGHAggr_NsR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_NsRx.c -o HGHAggr_NsRx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_Pois.c -o HGHAggr_Pois.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwL.c -o HGHAggr_PwL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwLx.c -o HGHAggr_PwLx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwR.c -o HGHAggr_PwR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_PwRx.c -o HGHAggr_PwRx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbL.c -o HGHAggr_WbL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbLx.c -o HGHAggr_WbLx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbR.c -o HGHAggr_WbR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGHAggr_WbRx.c -o HGHAggr_WbRx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_BsR.c -o HGH_BsR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_BsRx.c -o HGH_BsRx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_NsR.c -o HGH_NsR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_NsRx.c -o HGH_NsRx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_PwR.c -o HGH_PwR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_PwRx.c -o HGH_PwRx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_WbR.c -o HGH_WbR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HGH_WbRx.c -o HGH_WbRx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0C.c -o HazardBs0C.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0L.c -o HazardBs0L.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs0R.c -o HazardBs0R.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1C.c -o HazardBs1C.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1L.c -o HazardBs1L.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs1R.c -o HazardBs1R.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23C.c -o HazardBs23C.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23L.c -o HazardBs23L.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardBs23R.c -o HazardBs23R.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsC.c -o HazardNsC.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsL.c -o HazardNsL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardNsR.c -o HazardNsR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibC.c -o HazardWeibC.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibL.c -o HazardWeibL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HazardWeibR.c -o HazardWeibR.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c OptFunc.c -o OptFunc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SplineFunc.c -o SplineFunc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o mexhaz.so DeltaBs0R.o DeltaBs1R.o DeltaBs23R.o DeltaNsR.o DeltaWeibR.o FrailtyAdapt.o FrailtyAdaptL.o GaussProcLIN.o GaussProcNPH.o HGHAggr_BsL.o HGHAggr_BsLx.o HGHAggr_BsR.o HGHAggr_BsRx.o HGHAggr_NsL.o HGHAggr_NsLx.o HGHAggr_NsR.o HGHAggr_NsRx.o HGHAggr_Pois.o HGHAggr_PwL.o HGHAggr_PwLx.o HGHAggr_PwR.o HGHAggr_PwRx.o HGHAggr_WbL.o HGHAggr_WbLx.o HGHAggr_WbR.o HGHAggr_WbRx.o HGH_BsR.o HGH_BsRx.o HGH_NsR.o HGH_NsRx.o HGH_PwR.o HGH_PwRx.o HGH_WbR.o HGH_WbRx.o HazardBs0C.o HazardBs0L.o HazardBs0R.o HazardBs1C.o HazardBs1L.o HazardBs1R.o HazardBs23C.o HazardBs23L.o HazardBs23R.o HazardNsC.o HazardNsL.o HazardNsR.o HazardWeibC.o HazardWeibL.o HazardWeibR.o OptFunc.o SplineFunc.o init.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeiaI0F/R.INSTALL145d96372d63a2/mexhaz/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-mexhaz/00new/mexhaz/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mexhaz) * installing *source* package ‘relsurv’ ... ** package ‘relsurv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwVMi0E/R.INSTALL146809cff21ec/relsurv/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cmpfast.c -o cmpfast.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmatrix.c -o dmatrix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c exps.c -o exps.o exps.c: In function ‘expc’: exps.c:78:65: warning: "/*" within comment [-Wcomment] 78 | /*si2 = (double *)ALLOC(n, sizeof(double)); /*Si for each individual - a je to prav???*/ | gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastp.c -o netfastp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastpinter.c -o netfastpinter.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastpinter2.c -o netfastpinter2.o netfastpinter2.c: In function ‘netfastpinter2’: netfastpinter2.c:53:13: warning: variable ‘et2’ set but not used [-Wunused-but-set-variable] 53 | et2, | ^~~ netfastpinter2.c:46:13: warning: unused variable ‘nprec’ [-Wunused-variable] 46 | nprec; | ^~~~~ netfastpinter2.c:278:42: warning: ‘sisum’ may be used uninitialized [-Wmaybe-uninitialized] 278 | yidlisi[j]=hazard/sisum; //the total hazard divided by the si at the end of the crude interval | ~~~~~~^~~~~~ netfastpinter2.c:61:13: note: ‘sisum’ was declared here 61 | sisum, | ^~~~~ netfastpinter2.c:279:44: warning: ‘sisumtt’ may be used uninitialized [-Wmaybe-uninitialized] 279 | yidlisitt[j]=hazard/sisumtt; // the total hazard divided by the si at the beginning of the crude interval | ~~~~~~^~~~~~~~ netfastpinter2.c:62:13: note: ‘sisumtt’ was declared here 62 | sisumtt, | ^~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netwei.c -o netwei.o netwei.c: In function ‘netwei’: netwei.c:195:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 195 | for (k=0; k to_k) return; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘changeColBoundsInterface’: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1626:12: note: ‘to_k’ was declared here 1626 | HighsInt to_k; | ^ In member function ‘setNonbasicStatusInterface’, inlined from ‘setNonbasicStatusInterface’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:833:6, inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:666:29: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:863:31: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 863 | for (HighsInt k = from_k; k <= to_k; k++) { | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp: In member function ‘changeColBoundsInterface’: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:843:12: note: ‘to_k’ was declared here 843 | HighsInt to_k; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessBounds’: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:359:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 359 | if (from_k > to_k) return HighsStatus::kOk; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:357:12: note: ‘to_k’ was declared here 357 | HighsInt to_k; | ^ In function ‘deleteRowsFromLpVectors’, inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1407:26, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1420:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1420 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1416:12: note: ‘to_k’ was declared here 1416 | HighsInt to_k; | ^ In member function ‘deleteRows’, inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1408:26, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:605:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 605 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:603:12: note: ‘to_k’ was declared here 603 | HighsInt to_k; | ^ In function ‘deleteScale’, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:365:16, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1460:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1460 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1458:12: note: ‘to_k’ was declared here 1458 | HighsInt to_k; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessCosts.constprop’: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:288:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 288 | if (from_k > to_k) return return_status; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:286:12: note: ‘to_k’ was declared here 286 | HighsInt to_k; | ^ In function ‘changeLpCosts’, inlined from ‘changeCostsInterface’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:621:16, inlined from ‘changeColsCost’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/Highs.cpp:2081:49, inlined from ‘feasibilityPump’ at /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/mip/HighsPrimalHeuristics.cpp:1080:41: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1577:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1577 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘feasibilityPump’: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1575:12: note: ‘to_k’ was declared here 1575 | HighsInt to_k; | ^ make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/build' [100%] Built target highs make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/build' Install the project... -- Install configuration: "RELEASE" -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/bin/highs -- Set non-toolchain portion of runtime path of "/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/bin/highs" to "/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/lib" -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/filereaderlp/builder.hpp -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/filereaderlp/model.hpp -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/filereaderlp/reader.hpp -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/io/Filereader.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/io/FilereaderLp.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/io/FilereaderEms.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/io/FilereaderMps.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/io/HMpsFF.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/io/HMPSIO.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/io/HighsIO.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/io/LoadOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HConst.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HStruct.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsAnalysis.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsInfo.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsInfoDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsLp.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsLpSolverObject.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsLpUtils.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsModelUtils.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsRanging.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsRuntimeOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsSolution.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsSolutionDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsSolve.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/lp_data/HighsStatus.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsCliqueTable.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsCutGeneration.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsConflictPool.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsCutPool.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsDebugSol.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsDomainChange.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsDomain.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsDynamicRowMatrix.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsGFkSolve.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsImplications.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsLpAggregator.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsLpRelaxation.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsMipSolverData.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsMipSolver.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsModkSeparator.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsNodeQueue.h -- Installing: /home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs/mip/HighsObjectiveFunction.h -- Installing: 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directory '/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/inst/HiGHS/build' ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c highs_interface.cpp -o highs_interface.o highs_interface.cpp: In function ‘int32_t solver_get_sense(SEXP)’: highs_interface.cpp:259:17: warning: unused variable ‘status’ [-Wunused-variable] 259 | HighsStatus status = highs->getObjectiveSense(sense); | ^~~~~~ g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o highs.so RcppExports.o highs_interface.o -L/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/lib -L/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src/highslib/lib64 -lhighs -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpT0hoL3/R.INSTALL145d9b58428166/highs/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-highs/00new/highs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highs) checking Epi_2.48.tar.gz ... checking bshazard_1.1.tar.gz ... checking codeCollection_0.1.3.tar.gz ... checking cohorttools_0.1.6.tar.gz ... checking dani_0.1-1.tar.gz ... checking flexrsurv_2.0.18.tar.gz ... checking MCARtest_1.2.1.tar.gz ... checking Greg_2.0.2.tar.gz ... checking popEpi_0.4.11.tar.gz ... checking pubh_1.3.2.tar.gz ... checking biostat3_0.1.9.tar.gz ... checking fmsb_0.7.6.tar.gz ... checking metafor_4.6-0.tar.gz ... checking pander_0.6.5.tar.gz ... checking shinyPredict_0.1.1.tar.gz ... Depends: Package: Epi Depends: R (>= 3.5.0), utils Imports: cmprsk, etm, splines, MASS, survival, plyr, dplyr, Matrix, numDeriv, data.table, zoo, mgcv, magrittr Timings: user system elapsed Epi 355.681 16.077 374.384 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 4 10 Check results summary: Epi ... OK rdepends_biostat3 ... OK rdepends_bshazard ... NOTE * checking Rd contents ... NOTE rdepends_codeCollection ... OK rdepends_cohorttools ... OK rdepends_dani ... OK rdepends_flexrsurv ... OK rdepends_fmsb ... OK rdepends_Greg ... OK rdepends_MCARtest ... OK rdepends_metafor ... OK rdepends_pander ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_popEpi ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_pubh ... OK rdepends_shinyPredict ... NOTE * checking LazyData ... NOTE