* using log directory 'd:/RCompile/CRANincoming/R-devel/Epi.Rcheck'
* using R Under development (unstable) (2024-03-03 r86036 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'Epi/DESCRIPTION' ... OK
* this is package 'Epi' version '2.48'
* checking CRAN incoming feasibility ... [11s] Note_to_CRAN_maintainers
Maintainer: 'Bendix Carstensen <b@bxc.dk>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Epi' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
VCOV:
  function(x, ...)
VCOV.MIresult:
  function(object, ...)

VCOV:
  function(x, ...)
VCOV.mipo:
  function(object, ...)

VCOV:
  function(x, ...)
VCOV.crr:
  function(object, ...)

VCOV:
  function(x, ...)
VCOV.rq:
  function(object, ...)

VCOV:
  function(x, ...)
VCOV.gnlm:
  function(object, ...)

COEF:
  function(x, ...)
COEF.crr:
  function(object, ...)

COEF:
  function(x, ...)
COEF.MIresult:
  function(object, ...)

COEF:
  function(x, ...)
COEF.mipo:
  function(object, ...)

pretty:
  function(x, ...)
pretty.print.stattable.1d:
  function(x, width, digits)

pretty:
  function(x, ...)
pretty.print.stattable.2d:
  function(x, width, digits)

split:
  function(x, f, drop, ...)
split.to.width:
  function(x, width)

split:
  function(x, f, drop, ...)
split.lexis.1D:
  function(lex, breaks, time.scale, tol)

print:
  function(x, ...)
print.mh:
  function(m)

summary:
  function(object, ...)
summary.Icens:
  function(x, scale, ...)

Apparent methods for exported generics not registered:
  factorize.default
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s] OK
* checking Rd files ... NOTE
checkRd: (-1) ROC.Rd:82: Escaped LaTeX specials: \&
checkRd: (-1) cal.yr.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) plotCIF.Rd:79: Lost braces
    79 | \author{Esa L\"{a}\"{a}r\"{a}, \email{esa.laara@oulu.fi}
       |                ^
checkRd: (-1) plotCIF.Rd:79: Lost braces
    79 | \author{Esa L\"{a}\"{a}r\"{a}, \email{esa.laara@oulu.fi}
       |                     ^
checkRd: (-1) plotCIF.Rd:79: Lost braces
    79 | \author{Esa L\"{a}\"{a}r\"{a}, \email{esa.laara@oulu.fi}
       |                           ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... WARNING
Files in the 'vignettes' directory newer than all files in 'inst/doc':
  'topreport.tex'
* checking examples ... [38s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [358s] OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [19s] OK
* DONE
Status: 1 WARNING, 2 NOTEs