* using log directory ‘/srv/hornik/tmp/CRAN/Epi.Rcheck’
* using R Under development (unstable) (2024-03-04 r86048)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘Epi/DESCRIPTION’ ... OK
* this is package ‘Epi’ version ‘2.48’
* checking CRAN incoming feasibility ... [4s/7s] Note_to_CRAN_maintainers
Maintainer: ‘Bendix Carstensen <b@bxc.dk>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Epi’ can be installed ... [10s/10s] OK
* used C compiler: ‘Debian clang version 17.0.6 (5)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
VCOV:
  function(x, ...)
VCOV.MIresult:
  function(object, ...)

VCOV:
  function(x, ...)
VCOV.mipo:
  function(object, ...)

VCOV:
  function(x, ...)
VCOV.crr:
  function(object, ...)

VCOV:
  function(x, ...)
VCOV.rq:
  function(object, ...)

VCOV:
  function(x, ...)
VCOV.gnlm:
  function(object, ...)

COEF:
  function(x, ...)
COEF.crr:
  function(object, ...)

COEF:
  function(x, ...)
COEF.MIresult:
  function(object, ...)

COEF:
  function(x, ...)
COEF.mipo:
  function(object, ...)

pretty:
  function(x, ...)
pretty.print.stattable.1d:
  function(x, width, digits)

pretty:
  function(x, ...)
pretty.print.stattable.2d:
  function(x, width, digits)

split:
  function(x, f, drop, ...)
split.to.width:
  function(x, width)

split:
  function(x, f, drop, ...)
split.lexis.1D:
  function(lex, breaks, time.scale, tol)

print:
  function(x, ...)
print.mh:
  function(m)

summary:
  function(object, ...)
summary.Icens:
  function(x, scale, ...)

Apparent methods for exported generics not registered:
  factorize.default
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/19s] OK
* checking Rd files ... [1s/1s] NOTE
checkRd: (-1) ROC.Rd:82: Escaped LaTeX specials: \&
checkRd: (-1) cal.yr.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) plotCIF.Rd:79: Lost braces
    79 | \author{Esa L\"{a}\"{a}r\"{a}, \email{esa.laara@oulu.fi}
       |                ^
checkRd: (-1) plotCIF.Rd:79: Lost braces
    79 | \author{Esa L\"{a}\"{a}r\"{a}, \email{esa.laara@oulu.fi}
       |                     ^
checkRd: (-1) plotCIF.Rd:79: Lost braces
    79 | \author{Esa L\"{a}\"{a}r\"{a}, \email{esa.laara@oulu.fi}
       |                           ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory newer than all files in 'inst/doc':
  ‘topreport.tex’
* checking examples ... [28s/28s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [230s/230s] OK
* checking PDF version of manual ... [6s/6s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs