test_that("report_cases can simulate infections forward", { # define example cases cases <- example_confirmed[1:10] # set up example delays generation_time <- get_generation_time( disease = "SARS-CoV-2", source = "ganyani" ) incubation_period <- get_incubation_period( disease = "SARS-CoV-2", source = "lauer" ) reporting_delay <- dist_spec( mean = convert_to_logmean(2, 1), mean_sd = 0.1, sd = convert_to_logsd(2, 1), sd_sd = 0.1, max = 5 ) # Instead of running them model we use example # data for speed in this example. cases <- cases[, cases := as.integer(confirm)] cases <- cases[, confirm := NULL][, sample := 1] set.seed(123) reported_cases <- report_cases( case_estimates = cases, delays = delay_opts(incubation_period + reporting_delay), type = "sample" ) expect_equal(class(reported_cases), "list") expect_equal(class(reported_cases$samples), c("data.table", "data.frame")) expect_equal(class(reported_cases$summarised), c("data.table", "data.frame")) expect_equal(nrow(reported_cases$summarised), 9) expect_equal(class(reported_cases$summarised$median), "numeric") })