fit <- readRDS("test-models/regional_epinow/static.rds") cases <- readRDS("test-models/regional_epinow/cases.rds") test_that("regional_summary works with default settings", { out <- regional_summary( regional_output = fit$regional, reported_cases = cases ) expect_equal( names(out), c( "latest_date", "results", "summarised_results", "summary_plot", "summarised_measures", "reported_cases", "high_plots", "plots" ) ) expect_true(all(purrr::map_lgl(out, ~ !is.null(.)))) }) test_that("regional_summary works when no plots are requested", { out <- regional_summary( regional_output = fit$regional, reported_cases = cases, plot = FALSE ) expect_equal( names(out), c( "latest_date", "results", "summarised_results", "summarised_measures", "reported_cases" ) ) expect_true(all(purrr::map_lgl(out, ~ !is.null(.)))) }) test_that("regional_summary works with a lower and upper bound of 0", { regional_zero_fit <- lapply(fit$regional, function(x) { numeric_estimate <- x$summary[ measure == "New confirmed cases by infection date" ]$numeric_estimate[[1]] uppers <- grep("upper_", colnames(numeric_estimate), value = TRUE) lowers <- grep("lower_", colnames(numeric_estimate), value = TRUE) numeric_estimate[, paste(uppers) := 0] numeric_estimate[, paste(lowers) := 0] x$summary[ measure == "New confirmed cases by infection date", numeric_estimate := list(..numeric_estimate) ] return(x) }) out <- regional_summary( regional_output = regional_zero_fit, reported_cases = cases, plot = TRUE ) expect_equal( names(out), c( "latest_date", "results", "summarised_results", "summary_plot", "summarised_measures", "reported_cases", "high_plots", "plots" ) ) expect_true(all(purrr::map_lgl(out, ~ !is.null(.)))) })