Package: NADA2 Check: examples New result: ERROR Running examples in ‘NADA2-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: cen1way > ### Title: Peto-Peto one-factor test > ### Aliases: cen1way > > ### ** Examples > > data(PbHeron) > > # Two Groups > cen1way(PbHeron$Liver,PbHeron$LiverCen,PbHeron$DosageGroup) Warning: One or more group(s) do not have censored data. Error in match.arg(ci.sample.size, c("Total", "Uncensored")) : 'arg' must be NULL or a character vector Calls: cen1way Execution halted Package: NADA2 Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Censored_Data_Analysis.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/bxplot1-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10269 bytes Input file size = 10359 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8477 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8477 Output IDAT size = 8477 bytes (1792 bytes decrease) Output file size = 8555 bytes (1804 bytes = 17.41% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/bxplot2-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12210 bytes Input file size = 12300 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9897 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9897 Output IDAT size = 9897 bytes (2313 bytes decrease) Output file size = 9975 bytes (2325 bytes = 18.90% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/bxplot3-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12308 bytes Input file size = 12398 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10155 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10155 Output IDAT size = 10155 bytes (2153 bytes decrease) Output file size = 10233 bytes (2165 bytes = 17.46% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/scatplot1-1.png 624x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5598 bytes Input file size = 6456 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4974 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4974 Output IDAT size = 4974 bytes (624 bytes decrease) Output file size = 5052 bytes (1404 bytes = 21.75% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/scatplot2-1.png 624x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7666 bytes Input file size = 8524 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6877 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6877 Output IDAT size = 6877 bytes (789 bytes decrease) Output file size = 6955 bytes (1569 bytes = 18.41% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/scatplot3-1.png 624x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10049 bytes Input file size = 10919 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9123 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9123 Output IDAT size = 9123 bytes (926 bytes decrease) Output file size = 9201 bytes (1718 bytes = 15.73% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/cdf1-1.png 624x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7695 bytes Input file size = 8553 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6960 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6960 Output IDAT size = 6960 bytes (735 bytes decrease) Output file size = 7038 bytes (1515 bytes = 17.71% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/cdf2-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24218 bytes Input file size = 24320 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19542 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19542 Output IDAT size = 19542 bytes (4676 bytes decrease) Output file size = 19620 bytes (4700 bytes = 19.33% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/cdf comp1-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29521 bytes Input file size = 29635 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24108 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24108 Output IDAT size = 24108 bytes (5413 bytes decrease) Output file size = 24186 bytes (5449 bytes = 18.39% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/cdf comp2-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28986 bytes Input file size = 29100 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23717 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23717 Output IDAT size = 23717 bytes (5269 bytes decrease) Output file size = 23795 bytes (5305 bytes = 18.23% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/QQ1-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23854 bytes Input file size = 23956 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18690 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18690 Output IDAT size = 18690 bytes (5164 bytes decrease) Output file size = 18768 bytes (5188 bytes = 21.66% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/QQ2-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42112 bytes Input file size = 42250 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34001 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34001 Output IDAT size = 34001 bytes (8111 bytes decrease) Output file size = 34079 bytes (8171 bytes = 19.34% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/unnamed-chunk-12-1.png 624x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9027 bytes Input file size = 9897 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8203 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8203 Output IDAT size = 8203 bytes (824 bytes decrease) Output file size = 8281 bytes (1616 bytes = 16.33% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/unnamed-chunk-23-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28840 bytes Input file size = 28954 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23502 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23502 Output IDAT size = 23502 bytes (5338 bytes decrease) Output file size = 23580 bytes (5374 bytes = 18.56% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/unnamed-chunk-26-1.png 624x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33577 bytes Input file size = 33703 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26880 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26880 Output IDAT size = 26880 bytes (6697 bytes decrease) Output file size = 26958 bytes (6745 bytes = 20.01% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/unnamed-chunk-27-1.png 624x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32927 bytes Input file size = 33053 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26481 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26481 Output IDAT size = 26481 bytes (6446 bytes decrease) Output file size = 26559 bytes (6494 bytes = 19.65% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/unnamed-chunk-30-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7776 bytes Input file size = 7854 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6394 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6394 Output IDAT size = 6394 bytes (1382 bytes decrease) Output file size = 6472 bytes (1382 bytes = 17.60% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/unnamed-chunk-31-1.png 624x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33079 bytes Input file size = 33205 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26642 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26642 Output IDAT size = 26642 bytes (6437 bytes decrease) Output file size = 26720 bytes (6485 bytes = 19.53% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/unnamed-chunk-39-1.png 624x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11577 bytes Input file size = 12447 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10702 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10702 Output IDAT size = 10702 bytes (875 bytes decrease) Output file size = 10780 bytes (1667 bytes = 13.39% decrease) ** Processing: /home/hornik/tmp/CRAN/NADA2.Rcheck/vign_test/NADA2/vignettes/Censored_Data_Analysis_files/figure-html/unnamed-chunk-41-1.png 624x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 13081 bytes Input file size = 13951 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12028 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12028 Output IDAT size = 12028 bytes (1053 bytes decrease) Output file size = 12106 bytes (1845 bytes = 13.22% decrease) Quitting from lines 628-629 [unnamed-chunk-42] (Censored_Data_Analysis.Rmd) Error: processing vignette 'Censored_Data_Analysis.Rmd' failed with diagnostics: 'arg' must be NULL or a character vector --- failed re-building ‘Censored_Data_Analysis.Rmd’ SUMMARY: processing the following file failed: ‘Censored_Data_Analysis.Rmd’ Error: Vignette re-building failed. Execution halted