R Under development (unstable) (2024-09-14 r87148 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. It is recommended that you do not modify it. Where should you do additional > # test configuration? Learn more about the roles of various files in: * > # https://r-pkgs.org/testing-design.html#sec-tests-files-overview * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(EnrichDO) > > test_check("EnrichDO") -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored LEVEL: 4 103 nodes 12824 genes to be scored LEVEL: 3 30 nodes 11683 genes to be scored LEVEL: 2 5 nodes 8032 genes to be scored LEVEL: 1 0 nodes 0 genes to be scored -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored LEVEL: 4 103 nodes 12824 genes to be scored LEVEL: 3 30 nodes 11683 genes to be scored LEVEL: 2 5 nodes 8032 genes to be scored -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored LEVEL: 4 103 nodes 12824 genes to be scored LEVEL: 3 30 nodes 11683 genes to be scored -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored LEVEL: 4 103 nodes 12824 genes to be scored -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored LEVEL: 4 103 nodes 12824 genes to be scored LEVEL: 3 30 nodes 11683 genes to be scored LEVEL: 2 5 nodes 8032 genes to be scored LEVEL: 1 0 nodes 0 genes to be scored chr [1:3] "DOID:1561" "DOID:150" "DOID:4" chr [1:3] "DOID:1561" "DOID:150" "DOID:4" chr [1:6] "DOID:680" "DOID:1289" "DOID:331" "DOID:863" "DOID:7" "DOID:4" chr [1:6] "DOID:0050890" "DOID:1289" "DOID:331" "DOID:863" "DOID:7" ... chr [1:5] "DOID:1289" "DOID:331" "DOID:863" "DOID:7" "DOID:4" -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored LEVEL: 4 103 nodes 12824 genes to be scored LEVEL: 3 30 nodes 11683 genes to be scored LEVEL: 2 5 nodes 8032 genes to be scored LEVEL: 1 0 nodes 0 genes to be scored chr [1:3] "DOID:1561" "DOID:150" "DOID:4" chr [1:3] "DOID:1561" "DOID:150" "DOID:4" chr [1:6] "DOID:680" "DOID:1289" "DOID:331" "DOID:863" "DOID:7" "DOID:4" chr [1:6] "DOID:0050890" "DOID:1289" "DOID:331" "DOID:863" "DOID:7" ... chr [1:5] "DOID:1289" "DOID:331" "DOID:863" "DOID:7" "DOID:4" -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored LEVEL: 4 103 nodes 12824 genes to be scored LEVEL: 3 30 nodes 11683 genes to be scored LEVEL: 2 5 nodes 8032 genes to be scored LEVEL: 1 0 nodes 0 genes to be scored chr [1:3] "DOID:1561" "DOID:150" "DOID:4" chr [1:3] "DOID:1561" "DOID:150" "DOID:4" chr [1:6] "DOID:680" "DOID:1289" "DOID:331" "DOID:863" "DOID:7" "DOID:4" chr [1:6] "DOID:0050890" "DOID:1289" "DOID:331" "DOID:863" "DOID:7" ... chr [1:5] "DOID:1289" "DOID:331" "DOID:863" "DOID:7" "DOID:4" -- Descending rights test-- LEVEL: 13 1 nodes 72 genes to be scored LEVEL: 12 2 nodes 457 genes to be scored LEVEL: 11 3 nodes 907 genes to be scored LEVEL: 10 13 nodes 2279 genes to be scored LEVEL: 9 54 nodes 6504 genes to be scored LEVEL: 8 130 nodes 9483 genes to be scored LEVEL: 7 198 nodes 11209 genes to be scored LEVEL: 6 220 nodes 12574 genes to be scored LEVEL: 5 198 nodes 12936 genes to be scored LEVEL: 4 103 nodes 12824 genes to be scored LEVEL: 3 30 nodes 11683 genes to be scored LEVEL: 2 5 nodes 8032 genes to be scored LEVEL: 1 0 nodes 0 genes to be scored chr [1:3] "DOID:1561" "DOID:150" "DOID:4" chr [1:3] "DOID:1561" "DOID:150" "DOID:4" chr [1:6] "DOID:680" "DOID:1289" "DOID:331" "DOID:863" "DOID:7" "DOID:4" chr [1:6] "DOID:0050890" "DOID:1289" "DOID:331" "DOID:863" "DOID:7" ... chr [1:5] "DOID:1289" "DOID:331" "DOID:863" "DOID:7" "DOID:4" [ FAIL 0 | WARN 1 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 2 ] > > proc.time() user system elapsed 83.82 7.01 90.82