* using log directory ‘/srv/hornik/tmp/CRAN_pretest/EcoCleanR.Rcheck’ * using R Under development (unstable) (2025-10-31 r88977) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (7) Debian flang-new version 19.1.7 (7) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘EcoCleanR/DESCRIPTION’ ... OK * this is package ‘EcoCleanR’ version ‘0.0.0.9000’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/5s] NOTE Maintainer: ‘Priyanka Soni ’ New submission Version contains large components (0.0.0.9000) Possibly misspelled words in DESCRIPTION: biogeographic (2:53, 6:203, 6:323) Found the following (possibly) invalid URLs: URL: https://github.com/xxx/EcoCleanR/ From: README.md Status: 404 Message: Not Found The Title field should be in title case. Current version is: ‘Cleaning occurrence data to generate species biogeographic range’ In title case that is: ‘Cleaning Occurrence Data to Generate Species Biogeographic Range’ The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘EcoCleanR’ can be installed ... [16s/16s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [5s/5s] OK * checking whether the package can be loaded with stated dependencies ... [5s/5s] OK * checking whether the package can be unloaded cleanly ... [5s/5s] OK * checking whether the namespace can be loaded with stated dependencies ... [5s/5s] OK * checking whether the namespace can be unloaded cleanly ... [5s/5s] OK * checking loading without being on the library search path ... [5s/5s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [21s/21s] NOTE distance_calc: no visible global function definition for ‘cov’ distance_calc: no visible global function definition for ‘mahalanobis’ ec_db_merge: no visible binding for global variable ‘occurrenceStatus’ ec_db_merge: no visible binding for global variable ‘basisOfRecord’ ec_filter_by_uncertainty: no visible global function definition for ‘quantile’ ec_filter_by_uncertainty: no visible binding for global variable ‘decimalLatitude’ ec_flag_outlier: no visible global function definition for ‘quantile’ ec_geographic_map: no visible binding for global variable ‘decimalLongitude’ ec_geographic_map: no visible binding for global variable ‘decimalLatitude’ ec_geographic_map_w_flag: no visible binding for global variable ‘decimalLongitude’ ec_geographic_map_w_flag: no visible binding for global variable ‘decimalLatitude’ ec_merge_corrected_coordinates: no visible binding for global variable ‘cleaned_catalog’ ec_merge_corrected_coordinates: no visible binding for global variable ‘decimalLatitude’ ec_merge_corrected_coordinates: no visible binding for global variable ‘decimalLongitude’ ec_merge_corrected_coordinates: no visible binding for global variable ‘coordinateUncertaintyInMeters’ ec_plot_distance: no visible binding for global variable ‘geo_distance’ ec_plot_distance: no visible binding for global variable ‘maha_distance’ ec_plot_distance: no visible global function definition for ‘quantile’ ec_plot_var_range: no visible binding for global variable ‘Min’ ec_plot_var_range: no visible binding for global variable ‘Max’ ec_plot_var_range: no visible binding for global variable ‘variable’ ec_plot_var_range: no visible binding for global variable ‘ymin’ ec_plot_var_range: no visible binding for global variable ‘ymax’ ec_plot_var_range: no visible binding for global variable ‘value’ ec_rm_duplicate: no visible binding for global variable ‘cleaned_catalog’ ec_worms_synonym: no visible binding for global variable ‘scientificname’ ec_worms_synonym: no visible binding for global variable ‘scientificName’ ec_worms_synonym: no visible binding for global variable ‘record_count’ Undefined global functions or variables: Max Min basisOfRecord cleaned_catalog coordinateUncertaintyInMeters cov decimalLatitude decimalLongitude geo_distance maha_distance mahalanobis occurrenceStatus quantile record_count scientificName scientificname value variable ymax ymin Consider adding importFrom("stats", "cov", "mahalanobis", "quantile") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [14s/24s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed ec_extract_env_layers 0.892 0.403 7.728 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [94s/99s] OK Running ‘testthat.R’ [94s/99s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [22s/34s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs