* using log directory 'd:/RCompile/CRANincoming/R-devel/EPATADA.Rcheck' * using R version 4.5.0 alpha (2025-03-17 r87990 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'EPATADA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'EPATADA' version '0.0.1' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [23s] NOTE Maintainer: 'Cristina Mullin ' New submission Possibly misspelled words in DESCRIPTION: TADA (3:12) Unknown, possibly misspelled, fields in DESCRIPTION: 'Remotes' Size of tarball: 43293825 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EPATADA' can be installed ... OK * checking installed package size ... INFO installed size is 75.8Mb sub-directories of 1Mb or more: data 7.1Mb doc 23.0Mb extdata 43.0Mb help 2.2Mb * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: 'dev' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'TADA_AutoClean.Rd': \examples lines wider than 100 characters: # https://www.waterqualitydata.us/#statecode=US%3A09&characteristicType=Nutrient&startDateLo=04-01-2023&startDateHi=11-01-2023&mimeType ... [TRUNCATED] stationProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Station/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] physchemProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Result/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] projectProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Project/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] Rd file 'TADA_CheckRequiredFields.Rd': \examples lines wider than 100 characters: # Example WQP URL: https://www.waterqualitydata.us/#statecode=US%3A09&characteristicType=Nutrient&startDateLo=04-01-2023&startDateHi=11 ... [TRUNCATED] stationProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Station/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] physchemProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Result/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] projectProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Project/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] Rd file 'TADA_CreateDateTime.Rd': \examples lines wider than 100 characters: # Example WQP URL: https://www.waterqualitydata.us/#statecode=US%3A09&characteristicType=Nutrient&startDateLo=04-01-2023&startDateHi=11 ... [TRUNCATED] stationProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Station/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] physchemProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Result/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] projectProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Project/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] Rd file 'TADA_JoinWQPProfiles.Rd': \examples lines wider than 100 characters: # WQP URL: https://www.waterqualitydata.us/#statecode=US%3A09&characteristicType=Nutrient&startDateLo=04-01-2023&startDateHi=11-01-2023 ... [TRUNCATED] stationProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Station/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] physchemProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Result/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] projectProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Project/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] Rd file 'TADA_OrderCols.Rd': \examples lines wider than 100 characters: # Example WQP URL: https://www.waterqualitydata.us/#statecode=US%3A09&characteristicType=Nutrient&startDateLo=04-01-2023&startDateHi=11 ... [TRUNCATED] stationProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Station/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] physchemProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Result/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] projectProfile <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Project/search?statecode=US%3A09&characteristicType=Nut ... [TRUNCATED] Rd file 'TADA_ReadWQPWebServices.Rd': \examples lines wider than 100 characters: physchemresults1 <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Result/search?statecode=US%3A09&sampleMedia=water&sam ... [TRUNCATED] sites1 <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Station/search?statecode=US%3A09&sampleMedia=water&sampleMedia= ... [TRUNCATED] projects1 <- TADA_ReadWQPWebServices("https://www.waterqualitydata.us/data/Project/search?statecode=US%3A09&sampleMedia=water&sampleMed ... [TRUNCATED] These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [25s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > # Create a list of parameters in the dataset and the number of records of > # each parameter: > TADA_FieldValuesTable(Data_Nutrients_UT, field = "TADA.CharacteristicName") Value Count 1 NITROGEN 12538 2 NITRATE 1909 3 AMMONIA 91 > > > > > base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv") > base::cat("TADA_FieldValuesTable", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t") > cleanEx() > nameEx("TADA_FindNearbySites") > ### * TADA_FindNearbySites > > flush(stderr()); flush(stdout()) > > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: TADA_FindNearbySites > ### Title: Identify and group nearby monitoring locations (UNDER ACTIVE > ### DEVELOPMENT) > ### Aliases: TADA_FindNearbySites > > ### ** Examples > > GroupNearbySites_100m <- TADA_FindNearbySites(Data_Nutrients_UT) [1] "Transforming your data into a spatial object." [1] "Your WQP dataframe contains observations without a listed coordinate reference system (CRS). For these, we have assigned CRS 4326." ======== End of example output (where/before crash/hang up occured ?) ========