* using log directory 'd:/RCompile/CRANincoming/R-devel/ENMTools.Rcheck' * using R Under development (unstable) (2023-09-20 r85183 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'ENMTools/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ENMTools' version '1.1.2' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Dan Warren ' New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Baumgartner (10:616) Cardillo (10:506) Dinnage (10:598) Glor (10:278, 10:345, 10:439) Turelli (10:291, 10:452) biogeography (10:244) CRAN repository db overrides: X-CRAN-Comment: Archived on 2023-08-10 as issues were not corrected in time. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'ENMTools' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Mismatches for apparent methods not registered: format: function(x, ...) format.latlon: function(latlon) See section 'Registering S3 methods' in the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [46s] NOTE The legacy packages maptools, rgdal, and rgeos, underpinning the sp package, which was just loaded, will retire in October 2023. Please refer to R-spatial evolution reports for details, especially https://r-spatial.org/r/2023/05/15/evolution4.html. It may be desirable to make the sf package available; package maintainers should consider adding sf to Suggests:. The sp package is now running under evolution status 2 (status 2 uses the sf package in place of rgdal) * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking examples ... [45s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [66s] OK Running 'testthat.R' [66s] * checking PDF version of manual ... [14s] OK * checking HTML version of manual ... OK * DONE Status: 3 NOTEs