* using log directory ‘/srv/hornik/tmp/CRAN_pretest/DySS.Rcheck’
* using R Under development (unstable) (2026-01-24 r89326)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (1+b1)
    Debian flang version 21.1.8 (1+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘DySS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DySS’ version ‘1.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [2s/2s] NOTE
Maintainer: ‘Lu You <Lu.You@epi.usf.edu>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  DySS (16:30)
  Qiu (19:3, 20:3, 21:14, 22:14, 23:15, 24:3, 25:12, 25:36, 26:15)
  Xia (24:12)
  Xiang (19:15, 20:15)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2025-12-25 as issues were not addressed
    in time.

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘DySS’ can be installed ... [116s/115s] OK
* used Fortran compiler: ‘Debian flang version 21.1.8 (1+b1)’
* used C++ compiler: ‘Debian clang version 21.1.8 (1+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/7s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/6s] ERROR
Running examples in ‘DySS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: evaluate_control_chart_two_groups
> ### Title: Evaluate Control Charts
> ### Aliases: evaluate_control_chart_two_groups
> 
> ### ** Examples
> 
> pattern<-estimate_pattern_long_1d(
+   data_matrix=data_example_long_1d$data_matrix_IC,
+   time_matrix=data_example_long_1d$time_matrix_IC,
+   nobs=data_example_long_1d$nobs_IC,
+   design_interval=data_example_long_1d$design_interval,
+   n_time_units=data_example_long_1d$n_time_units,
+   estimation_method="meanvar",
+   smoothing_method="local linear",
+   bw_mean=0.1,
+   bw_var=0.1)
> 
> chart_IC_output<-monitor_long_1d(
+   data_example_long_1d$data_matrix_IC,
+   data_example_long_1d$time_matrix_IC,
+   data_example_long_1d$nobs_IC,
+   pattern=pattern,side="upward",chart="CUSUM",
+   method="standard",parameter=0.2)
> 
> chart_OC_output<-monitor_long_1d(
+   data_example_long_1d$data_matrix_OC,
+   data_example_long_1d$time_matrix_OC,
+   data_example_long_1d$nobs_OC,
+   pattern=pattern,side="upward",chart="CUSUM",
+   method="standard",parameter=0.2)
> 
> output_evaluate<-evaluate_control_chart_two_groups(
+   chart_matrix_IC=chart_IC_output$chart[1:50,],
+   time_matrix_IC=data_example_long_1d$time_matrix_IC[1:50,],
+   nobs_IC=data_example_long_1d$nobs_IC[1:50],
+   starttime_IC=rep(0,50),
+   endtime_IC=rep(1,50),
+   chart_matrix_OC=chart_OC_output$chart[1:50,],
+   time_matrix_OC=data_example_long_1d$time_matrix_OC[1:50,],
+   nobs_OC=data_example_long_1d$nobs_OC[1:50],
+   starttime_OC=rep(0,50),
+   endtime_OC=rep(1,50),
+   design_interval=data_example_long_1d$design_interval,
+   n_time_units=data_example_long_1d$n_time_units,
+   no_signal_action="maxtime")
Error in evaluate_control_chart_two_groups(chart_matrix_IC = chart_IC_output$chart[1:50,  : 
  could not find function "evaluate_control_chart_two_groups"
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘DySS.Rmd’ using rmarkdown

Quitting from DySS.Rmd:204-219 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `evaluate_control_chart_two_groups()`:
! could not find function "evaluate_control_chart_two_groups"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DySS.Rmd' failed with diagnostics:
could not find function "evaluate_control_chart_two_groups"
--- failed re-building ‘DySS.Rmd’

SUMMARY: processing the following file failed:
  ‘DySS.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [4s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs, 1 NOTE