* using log directory 'd:/RCompile/CRANincoming/R-devel/DySS.Rcheck'
* using R Under development (unstable) (2026-01-23 r89325 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'DySS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DySS' version '1.0.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Lu You <Lu.You@epi.usf.edu>'

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  DySS (16:30)
  Qiu (19:3, 20:3, 21:14, 22:14, 23:15, 24:3, 25:12, 25:36, 26:15)
  Xia (24:12)
  Xiang (19:15, 20:15)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2025-12-25 as issues were not addressed
    in time.

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'DySS' can be installed ... OK
* used Fortran compiler: 'GNU Fortran (GCC) 14.3.0'
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] NOTE
clean_time_unit: no visible global function definition for 'tail'
estimate_pattern_long_1d: no visible global function definition for
  'quantile'
Undefined global functions or variables:
  quantile tail
Consider adding
  importFrom("stats", "quantile")
  importFrom("utils", "tail")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'DySS-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calculate_ATS
> ### Title: Calculate ATS
> ### Aliases: calculate_ATS
> 
> ### ** Examples
> 
> data("data_example_long_1d")
> 
> result_pattern<-estimate_pattern_long_1d(
+   data_matrix=data_example_long_1d$data_matrix_IC,
+   time_matrix=data_example_long_1d$time_matrix_IC,
+   nobs=data_example_long_1d$nobs_IC,
+   design_interval=data_example_long_1d$design_interval,
+   n_time_units=data_example_long_1d$n_time_units,
+   estimation_method="meanvar",
+   smoothing_method="local linear",
+   bw_mean=0.1,
+   bw_var=0.1)
Error in .Call("_DySS_local_linear_mean_est_faster", PACKAGE = "DySS",  : 
  "_DySS_local_linear_mean_est_faster" not available for .Call() for package "DySS"
Calls: estimate_pattern_long_1d -> local_linear_mean_est_faster
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'DySS.Rmd' using rmarkdown

Quitting from DySS.Rmd:73-84 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.Call()`:
! "_DySS_local_linear_mean_est_faster" not available for .Call() for package "DySS"
---
Backtrace:
    ▆
 1. └─DySS::estimate_pattern_long_1d(...)
 2.   └─DySS:::local_linear_mean_est_faster(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DySS.Rmd' failed with diagnostics:
"_DySS_local_linear_mean_est_faster" not available for .Call() for package "DySS"
--- failed re-building 'DySS.Rmd'

SUMMARY: processing the following file failed:
  'DySS.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [27s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 2 NOTEs