* using log directory ‘/srv/hornik/tmp/CRAN_pretest/DspikeIn.Rcheck’
* using R Under development (unstable) (2025-03-26 r88060)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘DspikeIn/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DspikeIn’ version ‘1.2.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] WARNING
Maintainer: ‘Mitra Ghotbi <mitra.ghotbi@gmail.com>’

New submission

License components with restrictions and base license permitting such:
  MIT + file LICENSE
File 'LICENSE':
  # MIT License
  
  Copyright (c) 2025 Mitra Ghotbi
  
  Permission is hereby granted, free of charge, to any person obtaining a copy
  of this software and associated documentation files (the "Software"), to deal
  in the Software without restriction, including without limitation the rights
  to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
  copies of the Software, and to permit persons to whom the Software is
  furnished to do so, subject to the following conditions:
  
  The above copyright notice and this permission notice shall be included in all
  copies or substantial portions of the Software.
  
  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
  SOFTWARE.

Possibly misspelled words in DESCRIPTION:
  DESeq (16:52)
  DspikeIn (10:3, 15:27)
  TSE (12:76)
  TreeSummarizedExperiment (12:50)
  dplyr (16:22)
  edgeR (16:45)
  ggplot (16:36)
  ggtree (17:49)
  microbiome (13:69, 16:60)
  microbiomeutilities (17:3)
  phyloseq (12:37, 15:50)
  speedyseq (17:34)

Unknown, possibly misspelled, fields in DESCRIPTION:
  ‘Remotes’

Strong dependencies not in mainstream repositories:
  microbiomeutilities, speedyseq

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available:
  'microbiomeutilities', 'msa', 'speedyseq'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR, 1 WARNING