downloading reverse dependencies ... downloading CohortSymmetry_0.2.4.tar.gz ... ok downloading DrugExposureDiagnostics_1.1.2.tar.gz ... ok downloading CohortCharacteristics_0.5.0.tar.gz ... ok downloading CohortConstructor_0.3.5.tar.gz ... ok downloading OmopViewer_0.2.0.tar.gz ... ok installing dependencies ‘CirceR’, ‘CodelistGenerator’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortSurvival’, ‘DrugUtilisation’, ‘IncidencePrevalence’, ‘odbc’, ‘omock’, ‘OmopSketch’, ‘visOmopResults’ begin installing package ‘CodelistGenerator’ begin installing package ‘CohortSurvival’ begin installing package ‘visOmopResults’ begin installing package ‘omock’ begin installing package ‘CohortConstructor’ begin installing package ‘IncidencePrevalence’ begin installing package ‘CohortCharacteristics’ begin installing package ‘CirceR’ begin installing package ‘odbc’ * installing *source* package ‘CirceR’ ... ** this is package ‘CirceR’ version ‘1.3.3’ ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘omock’ ... ** this is package ‘omock’ version ‘0.3.2’ ** package ‘omock’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omock) * installing *source* package ‘CodelistGenerator’ ... ** this is package ‘CodelistGenerator’ version ‘3.4.1’ ** package ‘CodelistGenerator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CodelistGenerator) begin installing package ‘DrugUtilisation’ * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘1.0.0’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘visOmopResults’ ... ** this is package ‘visOmopResults’ version ‘1.0.2’ ** package ‘visOmopResults’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (visOmopResults) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘0.5.0’ ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.0’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.3.5’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘1.0.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘0.3.1’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘odbc’ ... ** this is package ‘odbc’ version ‘1.6.1’ ** package ‘odbc’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! PKG_CFLAGS= PKG_LIBS=-lodbc ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDCxs9e/R.INSTALL2e07f8c5ad51e/odbc/src' (cd cctz && \ make libcctz.a CC="gcc-14 -std=gnu23" CXX="g++-14 -std=gnu++17" CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native " AR="ar" ARFLAGS=rcs CXXPICFLAGS="-fpic") make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpDCxs9e/R.INSTALL2e07f8c5ad51e/odbc/src/cctz' g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_format.o src/time_zone_format.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_if.o src/time_zone_if.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_impl.o src/time_zone_impl.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_info.o src/time_zone_info.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_libc.o src/time_zone_libc.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_lookup.o src/time_zone_lookup.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_posix.o src/time_zone_posix.cc ar rcs libcctz.a time_zone_format.o time_zone_if.o time_zone_impl.o time_zone_info.o time_zone_libc.o time_zone_lookup.o time_zone_posix.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpDCxs9e/R.INSTALL2e07f8c5ad51e/odbc/src/cctz' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c odbc_result.cpp -o odbc_result.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c connection.cpp -o connection.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -DNANODBC_OVERALLOCATE_CHAR -c nanodbc/nanodbc.cpp -o nanodbc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c result.cpp -o result.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c odbc_connection.cpp -o odbc_connection.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c Iconv.cpp -o Iconv.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o odbc.so odbc_result.o connection.o nanodbc.o result.o odbc_connection.o RcppExports.o Iconv.o utils.o -lodbc -Lcctz -lcctz -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDCxs9e/R.INSTALL2e07f8c5ad51e/odbc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-odbc/00new/odbc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (odbc) checking DrugUtilisation_1.0.0.tar.gz ... checking CohortSymmetry_0.2.4.tar.gz ... checking DrugExposureDiagnostics_1.1.2.tar.gz ... checking CohortCharacteristics_0.5.0.tar.gz ... checking CohortConstructor_0.3.5.tar.gz ... checking OmopViewer_0.2.0.tar.gz ... Depends: Package: DrugUtilisation Depends: R (>= 4.1) Imports: CDMConnector (>= 1.4.0), cli, clock, CodelistGenerator (>= 3.1.0), dplyr, glue, omopgenerics (>= 1.0.0), PatientProfiles (>= 1.0.0), purrr, rlang, stringr, tidyr Timings: user system elapsed DrugUtilisation 360.372 17.811 252.414 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 4 Check results summary: DrugUtilisation ... OK rdepends_CohortCharacteristics ... OK rdepends_CohortConstructor ... OK rdepends_CohortSymmetry ... OK rdepends_DrugExposureDiagnostics ... OK rdepends_OmopViewer ... NOTE * checking DESCRIPTION meta-information ... NOTE