test_that("plot treatment (from cohort) works", { skip_on_cran() cdm <- mockDrugUtilisation( con = connection(), writeSchema = schema(), drug_exposure = dplyr::tibble( drug_exposure_id = 1:12, person_id = c(1, 1, 1, 2, 2, 3, 3, 1, 2, 4, 4, 1), drug_concept_id = c( 1125360, 2905077, 1125360, 1125360, 1125315, 1125360, 1125360, 1503327, 1503328, 1503297, 1503297, 1125360 ), drug_exposure_start_date = as.Date(c( "2020-01-15", "2020-01-20", "2020-02-20", "2021-02-15", "2021-05-12", "2022-01-12", "2022-11-15", "2020-01-01", "2021-03-11", "2010-01-01", "2010-03-15", "2025-01-01" )), drug_exposure_end_date = as.Date(c( "2020-01-25", "2020-03-15", "2020-02-28", "2021-03-15", "2021-05-25", "2022-02-15", "2022-12-14", "2020-04-13", "2021-04-20", "2010-01-05", "2010-05-12", "2025-12-31" )), drug_type_concept_id = 0, quantity = c(10, 20, 30, 1, 10, 5, 15, 20, 30, 14, 10, 2) ), dus_cohort = dplyr::tibble( cohort_definition_id = c(1, 2, 1, 1, 1, 2), subject_id = c(1, 1, 2, 3, 4, 4), cohort_start_date = as.Date(c( "2020-01-15", "2020-01-24", "2021-01-15", "2022-02-01", "2010-01-05", "2010-01-05" )), cohort_end_date = as.Date(c( "2020-02-28", "2020-02-10", "2021-06-08", "2022-12-01", "2010-03-15", "2010-03-15" )), extra_column = "asd" ), observation_period = dplyr::tibble( observation_period_id = 1:4, person_id = 1:4, observation_period_start_date = as.Date("2000-01-01"), observation_period_end_date = as.Date("2030-01-01"), period_type_concept_id = 0 ), seed = 1 ) treatment1 <- cdm$cohort1 |> summariseTreatment( treatmentCohortName = "cohort2", window = list(c(0, 30), c(31, 365)) ) expect_no_error( plot1 <- plotTreatment(treatment1) ) expect_true(ggplot2::is.ggplot(plot1)) treatment2 <- cdm$cohort1 |> summariseTreatment( treatmentCohortName = "cohort2", window = list(c(0, 30), c(31, 365)), indexDate = "cohort_end_date" ) expect_no_error( plot2 <- plotTreatment(treatment2) ) expect_true(ggplot2::is.ggplot(plot2)) treatment3 <- cdm$cohort1 |> PatientProfiles::addSex() |> PatientProfiles::addAge(ageGroup = list("<40" = c(0, 39), ">40" = c(40, 150))) |> summariseTreatment( treatmentCohortName = "cohort2", window = list(c(0, 30), c(31, 365)), treatmentCohortId = 1, strata = list("sex", "age_group") ) expect_no_error( plot3 <- plotTreatment(treatment3) ) expect_true(ggplot2::is.ggplot(plot3)) mockDisconnect(cdm = cdm) })