R Under development (unstable) (2024-12-21 r87453 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> library(DrugExposureDiagnostics)
> 
> test_check("DrugExposureDiagnostics")
Note: method with signature 'DBIConnection#Id' chosen for function 'dbExistsTable',
 target signature 'duckdb_connection#Id'.
 "duckdb_connection#ANY" would also be valid
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-12-22 22:21:36.79695
v Summary finished, at 2024-12-22 22:21:37.163514
population after earliestStartDate smaller than sample, sampling ignored
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-12-22 22:21:48.749174
v Summary finished, at 2024-12-22 22:21:49.007516
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-12-22 22:21:50.625757
v Summary finished, at 2024-12-22 22:21:50.939746
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
Progress: getting descendant concepts of ingredient (1125315) used in database
Progress: getting descendant concepts of ingredient
Progress: adding drug strength info
Progress: limiting to concepts in the db
Progress: adding concept names
Overall time taken: 0 minutes and 0 seconds
Time taken: 0 minutes and 0 seconds
Progress: getting drug strength for ingredient
Time taken: 0 minutes and 0 seconds
Progress: getting drug records for ingredient
Time taken: 0 minutes and 0 seconds
Progress: get concepts used
Time taken: 0 minutes and 0 seconds
Progress: sampling drug records
population after earliestStartDate smaller than sample, sampling ignored
Time taken: 0 minutes and 0 seconds
Progress: check drugsMissing
Time taken: 0 minutes and 1 seconds
Progress: check ExposureDuration
Time taken: 0 minutes and 0 seconds
Progress: check drugQuantity
Time taken: 0 minutes and 0 seconds
Finished
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-12-22 22:22:18.224184
v Summary finished, at 2024-12-22 22:22:18.760523
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-12-22 22:22:56.446325
v Summary finished, at 2024-12-22 22:22:56.831272
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
! cdm name not specified and could not be inferred from the cdm source table
! cdm name not specified and could not be inferred from the cdm source table
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
! cdm name not specified and could not be inferred from the cdm source table
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-12-22 22:23:50.930653
v Summary finished, at 2024-12-22 22:23:51.271235
! cdm name not specified and could not be inferred from the cdm source table
Time taken: 0 minutes and 0 seconds
testMessage
! cdm name not specified and could not be inferred from the cdm source table
[ FAIL 0 | WARN 251 | SKIP 6 | PASS 465 ]

══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• Skipping (1): 'test-shiny.R:2:3'
• Sys.getenv("TESTDB_USER") == "" is TRUE (1): 'test-SyntheaSqlServer.R:5:3'
• does not work with latest omopgenerics (3): 'test-runBenchmark.R:2:3',
  'test-runBenchmark.R:36:3', 'test-runBenchmark.R:47:3'
• empty test (1): 'test-executeChecks.R:306:1'

[ FAIL 0 | WARN 251 | SKIP 6 | PASS 465 ]
> 
> proc.time()
   user  system elapsed 
 183.07   10.10  179.23