getTestData <- function() { ingredient_drug_records <- tibble::tibble( drug_exposure_id = c("1", "2", "3", "4", "5"), drug_concept_id = c("1", "1", "2", "2", "3"), drug = c("x", "x", "x", "x", "x"), ingredient_concept_id = c("1", "1", "1", "1", "1"), ingredient = c("a", "a", "a", "a", "a"), person_id = c("1", "2", "3", "4", "5"), drug_type_concept_id = c("1", "1", "1", "1", "1"), route_concept_id = c("1", "2", "3", "4", "5"), lot_number = c("1", "2", "3", "4", "5"), provider_id = c("1", "2", "3", "4", "5"), visit_occurrence_id= c("1", "2", "3", "4", "5"), visit_detail_id= c("1", "2", "3", "4", "5"), drug_source_value= c("1", "2", "3", "4", "5"), drug_source_concept_id= c("40162522", "1127078", "1127078", "1127078", "1127433"), route_source_value= c("1", "2", "3", "4", "5"), dose_unit_source_value= c("1", "2", "3", "4", "5"), drug_exposure_start_date = c( as.Date("2010-01-01"), as.Date("2011-01-01"), as.Date("2012-01-01"), NA, as.Date("2013-01-01")), drug_exposure_end_date = c( as.Date("2011-01-01"), NA, as.Date("2013-01-01"), as.Date("2010-01-01"), as.Date("2014-01-01")), verbatim_end_date = c( as.Date("2011-01-01"), NA, as.Date("2013-01-01"), as.Date("2010-01-01"), as.Date("2014-01-01")), days_supply = c(NA,NA,NA,NA,366), quantity = c(10, 20, 30, 40, 50), stop_reason = rep("", 5), refills = rep(1, 5), sig = rep("", 5)) mockDrugExposure(ingredient_drug_records = ingredient_drug_records) } test_that("getDrugSourceConcepts", { cdm <- getTestData() result <- getDrugSourceConcepts(cdm, "ingredient_drug_records") %>% dplyr::collect() expect_equal(nrow(result), 5) expect_equal(ncol(result), 11) expect_equal(colnames(result), c("ingredient_concept_id", "ingredient", "drug_concept_id", "drug", "drug_source_concept_id", "drug_source", "drug_source_value", "n_records", "n_sample", "n_person", "proportion_records")) expect_true(all(result$drug_source %in% as.character(c("acetaminophen 325 MG Oral Tablet", "acetaminophen 750 MG / Hydrocodone Bitartrate", "acetaminophen 325 MG / Oxycodone Hydrochloride")))) expect_equal(result$proportion_records, c(1/5, 1/5, 1/5, 1/5, 1/5)) DBI::dbDisconnect(attr(cdm, "dbcon"), shutdown = TRUE) })