getTestData <- function() { ingredient_drug_records <- tibble::tibble( drug_exposure_id = c("1", "2", "3", "4", "5"), drug_concept_id = c("1", "1", "2", "2", "3"), drug = c("x", "x", "xx", "xx", "xxx"), ingredient_concept_id = c("1", "1", "2", "2", "2"), ingredient = c("a", "a", "b", "b", "b"), person_id = c("1", "2", "3", "4", "5"), drug_type_concept_id = c("1", "2", "3", "4", "5"), route_concept_id = c("1", "2", "3", "4", "5"), lot_number = c("1", "2", "3", "4", "5"), provider_id = c("1", "2", "3", "4", "5"), visit_occurrence_id= c("1", "2", "3", "4", "5"), visit_detail_id= c("1", "2", "3", "4", "5"), drug_source_value= c("1", "2", "3", "4", "5"), drug_source_concept_id= c("1", "2", "3", "4", "5"), route_source_value= c("1", "2", "3", "4", "5"), dose_unit_source_value= c("1", "2", "3", "4", "5"), drug_exposure_start_date = c( as.Date("2010-01-01"), as.Date("2011-01-01"), as.Date("2012-01-01"), NA, as.Date("2013-01-01")), drug_exposure_end_date = c( as.Date("2011-01-01"), NA, as.Date("2013-01-01"), as.Date("2010-01-01"), as.Date("2014-01-01")), verbatim_end_date = c( as.Date("2011-01-01"), NA, as.Date("2013-01-01"), as.Date("2010-01-01"), as.Date("2014-01-01")), days_supply = c(NA,NA,NA,NA,366), quantity = c(10, 20, 30, 40, 50), stop_reason = rep("", 5), refills = rep(1, 5), sig = rep("", 5)) mockDrugExposure(ingredient_drug_records = ingredient_drug_records) } test_that("summariseDrugExposureDuration test overall", { testData <- getTestData() result <- summariseDrugExposureDuration(testData, "ingredient_drug_records", byConcept = FALSE) expect_equal(nrow(result), 2) expect_equal(ncol(result), 17) expect_equal(colnames(result), c("ingredient_concept_id", "ingredient", "n_records", "n_sample","n_person", "n_non_negative_days", "n_negative_days", "proportion_negative_days", "minimum_drug_exposure_days", "q05_drug_exposure_days", "q10_drug_exposure_days", "q25_drug_exposure_days", "median_drug_exposure_days", "q75_drug_exposure_days", "q90_drug_exposure_days", "q95_drug_exposure_days", "maximum_drug_exposure_days")) DBI::dbDisconnect(attr(testData, "dbcon"), shutdown = TRUE) }) test_that("summariseDrugExposureDuration test by concept", { testData <- getTestData() resultByconcept <- summariseDrugExposureDuration(testData,"ingredient_drug_records", byConcept = TRUE) expect_equal(nrow(resultByconcept), 3) expect_equal(resultByconcept$n_records, c(2,2,1)) DBI::dbDisconnect(attr(testData, "dbcon"), shutdown = TRUE) })