getInputDb <- function() { ingredient_drug_records <- tibble::tibble( drug_exposure_id = c("1", "2", "3", "4", "5", "6", "7"), person_id = c("1", "2", "3", "4", "5", "6", "7"), drug_concept_id = c("1", "4", "2", "2", "3", "1", "2"), drug = c("x", "iv", "xx", "xx", "xxx", "iv", "v"), ingredient_concept_id = c("1", "1", "2", "2", "3", "4", "4"), ingredient = c("a", "a", "b", "b", "c", "d", "d"), drug_exposure_start_date = as.Date(c("2016-01-01","2017-01-01","2018-01-01","2019-01-01","2020-01-01","2021-01-01","2022-01-01")), drug_exposure_end_date = as.Date(c("2016-01-02","2017-01-03","2018-01-04","2019-01-05","2020-01-06","2021-01-07","2022-01-08")), days_supply = c(1,3,NA,4,5,6,7) ) mockDrugExposure(ingredient_drug_records = ingredient_drug_records) } test_that("check days supply overall", { testData <- getInputDb() result <- checkDaysSupply(testData, "ingredient_drug_records", byConcept = FALSE, sampleSize = 100) expect_equal(result$n_different_days_supply_and_drug_dates, c(1,0,0,0)) expect_equal(result$n_days_supply_match_drug_dates, c(1,1,1,2)) expect_equal(result$n_missing_days_supply, c(0,1,0,0)) totalLength <- dim(testData$ingredient_drug_records %>% dplyr::collect())[1] expect_true(sum(result$n_different_days_supply_and_drug_dates, result$n_days_supply_match_drug_dates, result$n_missing_days_supply) == totalLength) expect_equal(result$minimum_drug_exposure_days_supply, c(1,4,5,6)) expect_equal(result$n_records, c(2,2,1,2)) expect_equal(ncol(result), 20) expect_equal(result$n_person, c(2,2,1,2)) DBI::dbDisconnect(attr(testData, "dbcon"), shutdown = TRUE) }) test_that("check days supply by Concept", { testData <- getInputDb() result <- checkDaysSupply(testData, "ingredient_drug_records", byConcept = TRUE, sampleSize = 100) expect_equal(result$n_different_days_supply_and_drug_dates, c(0,0,0,0,0,1)) expect_equal(result$n_days_supply_match_drug_dates, c(1,1,1,1,1,0)) expect_equal(result$n_missing_days_supply, c(0,0,0,1,0,0)) totalLength <- dim(testData$ingredient_drug_records %>% dplyr::collect())[1] expect_true(sum(result$n_different_days_supply_and_drug_dates, result$n_days_supply_match_drug_dates, result$n_missing_days_supply) == totalLength) expect_equal(result$minimum_drug_exposure_days_supply, c(6,1,7,4,5,3)) expect_equal(result$n_records, c(1,1,1,2,1,1)) expect_equal(ncol(result), 22) expect_equal(result$n_person, c(1,1,1,2,1,1)) DBI::dbDisconnect(attr(testData, "dbcon"), shutdown = TRUE) })