R Under development (unstable) (2024-11-21 r87360 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> library(DrugExposureDiagnostics)
> 
> test_check("DrugExposureDiagnostics")
Note: method with signature 'DBIConnection#Id' chosen for function 'dbExistsTable',
 target signature 'duckdb_connection#Id'.
 "duckdb_connection#ANY" would also be valid
population after earliestStartDate smaller than sample, sampling ignored
`sample_size` casted to character.
`sample_size` eliminated from settings as all elements are NA.
population after earliestStartDate smaller than sample, sampling ignored
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-11-22 13:37:04.576184
v Summary finished, at 2024-11-22 13:37:05.084803
`sample_size` casted to character.
`sample_size` eliminated from settings as all elements are NA.
population after earliestStartDate smaller than sample, sampling ignored
`sample_size` casted to character.
`sample_size` eliminated from settings as all elements are NA.
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-11-22 13:37:23.316949
v Summary finished, at 2024-11-22 13:37:23.941238
`sample_size` casted to character.
`sample_size` eliminated from settings as all elements are NA.
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-11-22 13:37:26.770572
v Summary finished, at 2024-11-22 13:37:27.377996
`sample_size` casted to character.
`sample_size` eliminated from settings as all elements are NA.
Progress: getting descendant concepts of ingredient (1125315) used in database
Progress: getting descendant concepts of ingredient
Progress: adding drug strength info
Progress: limiting to concepts in the db
Progress: adding concept names
Overall time taken: 0 minutes and 1 seconds
Time taken: 0 minutes and 1 seconds
Progress: getting drug strength for ingredient
Time taken: 0 minutes and 0 seconds
Progress: getting drug records for ingredient
Time taken: 0 minutes and 0 seconds
Progress: get concepts used
Time taken: 0 minutes and 0 seconds
Progress: sampling drug records
population after earliestStartDate smaller than sample, sampling ignored
Time taken: 0 minutes and 0 seconds
Progress: check drugsMissing
Time taken: 0 minutes and 2 seconds
Progress: check ExposureDuration
Time taken: 0 minutes and 0 seconds
Progress: check drugQuantity
Time taken: 0 minutes and 0 seconds
Finished
population after earliestStartDate smaller than sample, sampling ignored
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-11-22 13:38:11.285009
v Summary finished, at 2024-11-22 13:38:12.230101
`sample_size` casted to character.
`sample_size` eliminated from settings as all elements are NA.
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-11-22 13:39:09.864442
v Summary finished, at 2024-11-22 13:39:10.43333
`sample_size` casted to character.
`sample_size` eliminated from settings as all elements are NA.
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
population after earliestStartDate smaller than sample, sampling ignored
i The following estimates will be computed:
* daily_dose: count_missing, percentage_missing, mean, sd, q05, q25, median, q75, q95, min, max
! Table is collected to memory as not all requested estimates are supported on the database side
> Start summary of data, at 2024-11-22 13:40:33.434484
v Summary finished, at 2024-11-22 13:40:34.004103
`sample_size` casted to character.
`sample_size` eliminated from settings as all elements are NA.
Time taken: 0 minutes and 0 seconds
testMessage
[ FAIL 0 | WARN 119 | SKIP 5 | PASS 466 ]

══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-runBenchmark.R:2:3', 'test-runBenchmark.R:36:3',
  'test-runBenchmark.R:47:3', 'test-shiny.R:2:3'
• Sys.getenv("TESTDB_USER222") == "" is TRUE (1): 'test-SyntheaSqlServer.R:5:3'

[ FAIL 0 | WARN 119 | SKIP 5 | PASS 466 ]
> 
> proc.time()
   user  system elapsed 
 280.98   15.71  279.29