* using log directory ‘/srv/hornik/tmp/CRAN_pretest/DoseFinding.Rcheck’
* using R Under development (unstable) (2025-03-06 r87893)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘DoseFinding/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DoseFinding’ version ‘1.3-1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/6s] NOTE
Maintainer: ‘Marius Thomas <marius.thomas@novartis.com>’

Size of tarball: 28473665 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... NOTE
Found the following apparent object files/libraries:
  revdep/library/DoseFinding/new/DoseFinding/libs/x64/DoseFinding.dll
  revdep/library/DoseFinding/new/cli/libs/x64/cli.dll
  revdep/library/DoseFinding/new/colorspace/libs/x64/colorspace.dll
  revdep/library/DoseFinding/new/fansi/libs/x64/fansi.dll
  revdep/library/DoseFinding/new/farver/libs/x64/farver.dll
  revdep/library/DoseFinding/new/glue/libs/x64/glue.dll
  revdep/library/DoseFinding/new/isoband/libs/x64/isoband.dll
  revdep/library/DoseFinding/new/magrittr/libs/x64/magrittr.dll
  revdep/library/DoseFinding/new/mvtnorm/libs/x64/mvtnorm.dll
  revdep/library/DoseFinding/new/rlang/libs/x64/rlang.dll
  revdep/library/DoseFinding/new/tibble/libs/x64/tibble.dll
  revdep/library/DoseFinding/new/utf8/libs/x64/utf8.dll
  revdep/library/DoseFinding/new/vctrs/libs/x64/vctrs.dll
Object files/libraries should not be included in a source package.

Subdirectory ‘revdep/library/DoseFinding/new/DoseFinding’ seems to contain an installed version of the package.
* checking if there is a namespace ... OK
* checking for executable files ... WARNING
Found the following executable files:
  revdep/library/DoseFinding/new/DoseFinding/libs/x64/DoseFinding.dll
  revdep/library/DoseFinding/new/cli/libs/x64/cli.dll
  revdep/library/DoseFinding/new/colorspace/libs/x64/colorspace.dll
  revdep/library/DoseFinding/new/fansi/libs/x64/fansi.dll
  revdep/library/DoseFinding/new/farver/libs/x64/farver.dll
  revdep/library/DoseFinding/new/glue/libs/x64/glue.dll
  revdep/library/DoseFinding/new/isoband/libs/x64/isoband.dll
  revdep/library/DoseFinding/new/magrittr/libs/x64/magrittr.dll
  revdep/library/DoseFinding/new/mvtnorm/libs/x64/mvtnorm.dll
  revdep/library/DoseFinding/new/rlang/libs/x64/rlang.dll
  revdep/library/DoseFinding/new/tibble/libs/x64/tibble.dll
  revdep/library/DoseFinding/new/utf8/libs/x64/utf8.dll
  revdep/library/DoseFinding/new/vctrs/libs/x64/vctrs.dll
Source packages should not contain undeclared executable files.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DoseFinding’ can be installed ... [6s/6s] OK
* used C compiler: ‘Debian clang version 19.1.7 (1+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘revdep’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION files in a non-standard place:
  revdep/library/DoseFinding/new/colorspace/CITATION
  revdep/library/DoseFinding/new/ggplot2/CITATION
  revdep/library/DoseFinding/new/mvtnorm/CITATION
  revdep/library/DoseFinding/new/viridisLite/CITATION
Most likely ‘inst/CITATION’ should be used instead.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [91s/91s] OK
  Running ‘testgFit.R’ [1s/1s]
  Running ‘testplanMod.R’ [0s/0s]
  Running ‘testsDesign.R’ [1s/1s]
  Running ‘testsFitting.R’ [1s/1s]
  Running ‘testsMCPMod.R’ [1s/1s]
  Running ‘testsMCT.R’ [2s/2s]
  Running ‘testsoptContr.R’ [1s/1s]
  Running ‘testsplotDRMod.R’ [0s/0s]
  Running ‘testssampSize.R’ [0s/0s]
  Running ‘testssamplMod.R’ [1s/1s]
  Running ‘testthat.R’ [82s/82s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [113s/113s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 4 NOTEs