* using log directory ‘/srv/hornik/tmp/CRAN/DivInsight.Rcheck’ * using R Under development (unstable) (2023-09-26 r85226) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (15) GNU Fortran (Debian 13.2.0-4) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘DivInsight/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DivInsight’ version ‘1.2.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘James Churchward ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Repurpose (10:14) CRAN repository db overrides: X-CRAN-Comment: Archived on 2023-08-26 as check issues were not corrected in time. Package has a VignetteBuilder field but no prebuilt vignette index. Size of tarball: 11960998 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘DivInsight’ can be installed ... [42s/42s] WARNING Found the following significant warnings: Warning: replacing previous import ‘dplyr::combine’ by ‘gridExtra::combine’ when loading ‘DivInsight’ See ‘/srv/hornik/tmp/CRAN/DivInsight.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/9s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [18s/18s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘1_diversity_statistics.Rmd’ ‘2_create_speccomm.Rmd’ ‘3_divstats_environment.Rmd’ ‘4_taxon_range.Rmd’ * checking examples ... [35s/35s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [2s/2s] OK Running ‘testthat.R’ [2s/2s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... WARNING Directory 'inst/doc' does not exist. Package vignettes without corresponding single PDF/HTML: ‘1_diversity_statistics.Rmd’ ‘2_create_speccomm.Rmd’ ‘3_divstats_environment.Rmd’ ‘4_taxon_range.Rmd’ * checking re-building of vignette outputs ... [70s/97s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 WARNINGs, 1 NOTE