downloading reverse dependencies ... downloading Compositional_6.8.tar.gz ... ok downloading HDiR_1.1.3.tar.gz ... ok downloading pgKDEsphere_1.0.1.tar.gz ... ok installing dependencies ‘bigreadr’, ‘codalm’, ‘Directional’, ‘DirStats’, ‘FlexDir’, ‘matrixStats’, ‘mixture’, ‘mvhtests’, ‘NPCirc’, ‘pchc’, ‘regda’, ‘rotasym’ also installing the dependencies ‘dcov’, ‘Bolstad2’ begin installing package ‘dcov’ begin installing package ‘Bolstad2’ begin installing package ‘bigreadr’ begin installing package ‘Directional’ begin installing package ‘FlexDir’ begin installing package ‘mixture’ begin installing package ‘mvhtests’ begin installing package ‘regda’ begin installing package ‘codalm’ begin installing package ‘rotasym’ begin installing package ‘matrixStats’ * installing *source* package ‘codalm’ ... ** package ‘codalm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (codalm) * installing *source* package ‘regda’ ... ** package ‘regda’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (regda) * installing *source* package ‘Bolstad2’ ... ** package ‘Bolstad2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Bolstad2) begin installing package ‘NPCirc’ * installing *source* package ‘FlexDir’ ... ** package ‘FlexDir’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FlexDir) * installing *source* package ‘mvhtests’ ... ** package ‘mvhtests’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvhtests) * installing *source* package ‘bigreadr’ ... ** package ‘bigreadr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7lTAB9/R.INSTALL3924ccd22b947/bigreadr/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nlines-split.cpp -o nlines-split.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bigreadr.so RcppExports.o nlines-split.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7lTAB9/R.INSTALL3924ccd22b947/bigreadr/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-bigreadr/00new/bigreadr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigreadr) * installing *source* package ‘matrixStats’ ... ** package ‘matrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVWCFm7/R.INSTALL3924de5e96f2ab/matrixStats/src' gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c 000.init.c -o 000.init.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c allocMatrix2.c -o allocMatrix2.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c anyMissing.c -o anyMissing.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binCounts.c -o binCounts.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binMeans.c -o binMeans.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colCounts.c -o colCounts.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colOrderStats.c -o colOrderStats.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colRanges.c -o colRanges.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diff2.c -o diff2.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c indexByRow.c -o indexByRow.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logSumExp.c -o logSumExp.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mean2.c -o mean2.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c naming.c -o naming.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c productExpSumLog.c -o productExpSumLog.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c psortKM.c -o psortKM.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCounts.c -o rowCounts.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCummaxs.c -o rowCummaxs.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCummins.c -o rowCummins.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCumprods.c -o rowCumprods.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCumsums.c -o rowCumsums.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowDiffs.c -o rowDiffs.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowLogSumExp.c -o rowLogSumExp.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMads.c -o rowMads.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMeans2.c -o rowMeans2.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMedians.c -o rowMedians.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowOrderStats.c -o rowOrderStats.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowRanges.c -o rowRanges.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowRanksWithTies.c -o rowRanksWithTies.o In file included from rowRanksWithTies_lowlevel.h:25, from rowRanksWithTies.c:10: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Average_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:30: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Average_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:37: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Average_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:42: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Average_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:55: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_First_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:60: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_First_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:67: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_First_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:72: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_First_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:85: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Last_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:90: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Last_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:97: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Last_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:102: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Last_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:115: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Random_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:120: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Random_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:127: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Random_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:132: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Random_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:145: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Min_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:150: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Min_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:157: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Min_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:162: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Min_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:175: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Max_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:180: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Max_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:187: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Max_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:192: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Max_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:205: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Dense_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:210: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Dense_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:217: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Dense_dbl’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ In file included from rowRanksWithTies_lowlevel.h:222: rowRanksWithTies_lowlevel_template.h: In function ‘colRanksWithTies_Dense_int’: rowRanksWithTies_lowlevel_template.h:135:1: warning: embedding a directive within macro arguments is not portable 135 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:137:1: warning: embedding a directive within macro arguments is not portable 137 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:139:1: warning: embedding a directive within macro arguments is not portable 139 | #endif | ^ rowRanksWithTies_lowlevel_template.h:148:1: warning: embedding a directive within macro arguments is not portable 148 | #if MARGIN == 'r' | ^ rowRanksWithTies_lowlevel_template.h:150:1: warning: embedding a directive within macro arguments is not portable 150 | #elif MARGIN == 'c' | ^ rowRanksWithTies_lowlevel_template.h:152:1: warning: embedding a directive within macro arguments is not portable 152 | #endif | ^ gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowSums2.c -o rowSums2.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowVars.c -o rowVars.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c signTabulate.c -o signTabulate.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sum2.c -o sum2.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c validateIndices.c -o validateIndices.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightedMean.c -o weightedMean.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightedMedian.c -o weightedMedian.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c x_OP_y.c -o x_OP_y.o gcc-13 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVWCFm7/R.INSTALL3924de5e96f2ab/matrixStats/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-matrixStats/00new/matrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixStats) * installing *source* package ‘rotasym’ ... ** package ‘rotasym’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn1i55p/R.INSTALL3924dc6628c59f/rotasym/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vMF.cpp -o vMF.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rotasym.so RcppExports.o vMF.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpn1i55p/R.INSTALL3924dc6628c59f/rotasym/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-rotasym/00new/rotasym/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rotasym) begin installing package ‘DirStats’ * installing *source* package ‘DirStats’ ... ** package ‘DirStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkXLYy6/R.INSTALL392a3859028d18/DirStats/src' gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c kde_dir_vmf.f90 -o kde_dir_vmf.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c lcv_dir_vmf.f90 -o lcv_dir_vmf.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c lscv_dir_vmf.f90 -o lscv_dir_vmf.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ribesl.f90 -o ribesl.o ribesl.f90:311:40: 311 | 130 B(N+L) = ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) gcc-13 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o DirStats.so init.o kde_dir_vmf.o lcv_dir_vmf.o lscv_dir_vmf.o ribesl.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkXLYy6/R.INSTALL392a3859028d18/DirStats/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-DirStats/00new/DirStats/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DirStats) * installing *source* package ‘Directional’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Directional) * installing *source* package ‘NPCirc’ ... ** package ‘NPCirc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXiBcTP/R.INSTALL39288453b0c35d/NPCirc/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c DoublePoisson.cpp -o DoublePoisson.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Multimodal.cpp -o Multimodal.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mixtures.cpp -o mixtures.o g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o NPCirc.so DoublePoisson.o Multimodal.o RcppExports.o mixtures.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXiBcTP/R.INSTALL39288453b0c35d/NPCirc/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-NPCirc/00new/NPCirc/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NPCirc) * installing *source* package ‘mixture’ ... ** package ‘mixture’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-13 -std=gnu++17 accepts -g... yes checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E checking for g++-13 -std=gnu++17 option to support OpenMP... -fopenmp checking for gsl-config... /usr/bin/gsl-config configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPV8goE/R.INSTALL3924d6669f4062/mixture/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -fopenmp -DARMA_64BIT_WORD -I/usr/include -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -fopenmp -DARMA_64BIT_WORD -I/usr/include -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pcm.cpp -o pcm.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mixture.so RcppExports.o pcm.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPV8goE/R.INSTALL3924d6669f4062/mixture/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-mixture/00new/mixture/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixture) * installing *source* package ‘dcov’ ... ** package ‘dcov’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxjENBR/R.INSTALL3924c6fe49670/dcov/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bit.cpp -o bit.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c centering.cpp -o centering.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dcov.cpp -o dcov.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dcov1v1.cpp -o dcov1v1.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mdcov.cpp -o mdcov.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pcov.cpp -o pcov.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pdcov.cpp -o pdcov.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pdcov1v1.cpp -o pdcov1v1.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c perm_test.cpp -o perm_test.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dcov.so RcppExports.o bit.o centering.o dcov.o dcov1v1.o mdcov.o pcov.o pdcov.o pdcov1v1.o perm_test.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxjENBR/R.INSTALL3924c6fe49670/dcov/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-dcov/00new/dcov/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dcov) begin installing package ‘pchc’ * installing *source* package ‘pchc’ ... ** package ‘pchc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pchc) checking Directional_6.6.tar.gz ... checking Compositional_6.8.tar.gz ... checking HDiR_1.1.3.tar.gz ... checking pgKDEsphere_1.0.1.tar.gz ... Depends: Package: Directional Imports: bigstatsr, doParallel, foreach, ggplot2, grDevices, magrittr, parallel, Rfast, Rfast2, Rnanoflann, rgl, rnaturalearth, sf Timings: user system elapsed Directional 185.167 10.502 196.493 Results: Check status summary: OK Source packages 1 Reverse depends 3 Check results summary: Directional ... OK rdepends_Compositional ... OK rdepends_HDiR ... OK rdepends_pgKDEsphere ... OK