* using log directory ‘/srv/hornik/tmp/CRAN_pretest/Dimodal.Rcheck’
* using R Under development (unstable) (2025-11-19 r89040)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.5 (1)
    Debian flang version 21.1.5 (1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘Dimodal/DESCRIPTION’ ... OK
* this is package ‘Dimodal’ version ‘1.0.0’
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Greg Kreider <support@primachvis.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  mis (15:55)

Suggests or Enhances not in mainstream repositories:
  bcp, otsad
* checking package namespace information ... OK
* checking package dependencies ... INFO
Packages suggested but not available for checking: 'bcp', 'otsad'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘Dimodal’ can be installed ... [5s/5s] OK
* used C compiler: ‘Debian clang version 21.1.5 (1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
print:
  function(x, ...)
print.peakmatch:
  function(lp, diw, lp2diw, near)

print:
  function(x, ...)
print.flatmatch:
  function(lp, diw, lp2diw, foverlap)

format:
  function(x, ...)
format.libs:
  function(libs, txt, w)

format:
  function(x, ...)
format.pos:
  function(pos, txt, w)

plot:
  function(x, ...)
plot.Dimodal.lp:
  function(x, opt, add.decile)

plot:
  function(x, ...)
plot.Dimodal.cpt:
  function(x, opt, add.decile)

plot:
  function(x, ...)
plot.Dimodal.hist:
  function(x, opt, feat.src)

plot:
  function(x, ...)
plot.hclpals:
  function(n, cblindfn, pals)

plot:
  function(x, ...)
plot.fttrack:
  function(ft, nx, smooth, maxwin)

plot:
  function(x, ...)
plot.Dimodal.diw:
  function(x, opt, add.decile)

plot:
  function(x, ...)
plot.pktrack:
  function(pk, nx, smooth, maxwin)

nchar:
  function(x, type, allowNA, keepNA)
nchar.marked:
  function(x)
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/8s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [12s/12s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
kirkwood 8.519  0.007    8.53
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [2s/2s] ERROR
  Running ‘test_all.R’ [2s/2s]
Running the tests in ‘tests/test_all.R’ failed.
Complete output:
  > 
  > # Manually run test_Ditrack.Rtest because of run time.
  > 
  > source('../tests/test_Diopt.Rtest', echo=FALSE)
  Loading required package: statmod
    all Diopt tests PASSED
  > source('../tests/test_Dimodal.Rtest', echo=FALSE)
    all Dimodal tests PASSED
  > source('../tests/test_find_runs.Rtest', echo=FALSE)
    all find.runs tests PASSED
  > source('../tests/test_find_peaks.Rtest', echo=FALSE)
  
   *** caught segfault ***
  address 0x1, cause 'memory not mapped'
  
  Traceback:
   1: (function (x, fht, frelht, fhtie, fhsupp) {    if (!is.vector(x)) {        x <- as.vector(x)    }    pk <- .Call("C_find_peaks", x, fht, frelht, fhtie, fhsupp,         PACKAGE = "Dimodal")    df <- as.data.frame(pk)    class(df) <- c("Dipeak", class(df))    df})(integer(0), 0.05, 0.05, 0.001, 0.9)
   2: do.call(cmd, args)
   3: doTryCatch(return(expr), name, parentenv, handler)
   4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5: tryCatchList(expr, classes, parentenv, handlers)
   6: tryCatch(do.call(cmd, args), error = function(e) {    matrix(1, nrow = 1, ncol = 1)})
   7: verify.empty("BTP16", find.peaks, list((1:50)[-(1:50)], 0.05,     0.05, 0.001, 0.9))
   8: eval(ei, envir)
   9: eval(ei, envir)
  10: withVisible(eval(ei, envir))
  11: source("../tests/test_find_peaks.Rtest", echo = FALSE)
  An irrecoverable exception occurred. R is aborting now ...
  Segmentation fault
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 3 NOTEs