* using log directory 'd:/RCompile/CRANincoming/R-devel/DescTools.Rcheck' * using R Under development (unstable) (2024-08-20 r87029 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'DescTools/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DescTools' version '0.99.56' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [27s] NOTE Maintainer: 'Andri Signorell ' Suggests or Enhances not in mainstream repositories: RDCOMClient Availability using Additional_repositories specification: RDCOMClient yes http://www.omegahat.net/R * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'RDCOMClient' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DescTools' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 13.2.0' * used Fortran compiler: 'GNU Fortran (GCC) 13.2.0' * used C++ compiler: 'g++.exe (GCC) 13.2.0' * checking C++ specification ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [97s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'DescTools-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: BreslowDayTest > ### Title: Breslow-Day Test for Homogeneity of the Odds Ratios > ### Aliases: BreslowDayTest > ### Keywords: htest > > ### ** Examples > > migraine <- xtabs(freq ~ ., + cbind(expand.grid(treatment=c("active", "placebo"), + response =c("better", "same"), + gender =c("female", "male")), + freq=c(16, 5, 11, 20, 12, 7, 16, 19)) + ) > > # get rid of gender > tab <- xtabs(Freq ~ treatment + response, migraine) > Desc(tab) ------------------------------------------------------------------------------ tab (xtabs, table) Summary: n: 106, rows: 2, columns: 2 Pearson's Chi-squared test (cont. adj): X-squared = 7.3178, df = 1, p-value = 0.006827 Fisher's exact test p-value = 0.00491 McNemar's chi-squared = 5.0256, df = 1, p-value = 0.02497 estimate lwr.ci upr.ci' odds ratio 3.3704 1.4616 7.7721 rel. risk (col1) 2.1636 1.2375 3.7829 rel. risk (col2) 0.6420 0.4712 0.8746 prop. diff 0.2738 0.0898 0.4397 Contingency Coeff. 0.272 Cramer's V 0.282 Kendall Tau-b 0.282 response better same Sum treatment active freq 28 27 55 perc 26.4% 25.5% 51.9% p.row 50.9% 49.1% . p.col 70.0% 40.9% . placebo freq 12 39 51 perc 11.3% 36.8% 48.1% p.row 23.5% 76.5% . p.col 30.0% 59.1% . Sum freq 40 66 106 perc 37.7% 62.3% 100.0% p.row . . . p.col . . . Error in .LineSep(n = 10) : argument "sep" is missing, with no default Calls: ... gettextf -> sprintf -> .LineSep -> Coalesce -> lapply Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'TestsPseudoR2.R' Running 'misc.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [60s] OK * checking HTML version of manual ... [81s] OK * DONE Status: 1 ERROR, 2 NOTEs